Planaria EST Database


DrC_02814

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02814
         (453 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41115|RS11_XENLA  40S ribosomal protein S11                   201   5e-52
sp|P62282|RS11_RAT  40S ribosomal protein S11 >gi|54039310|s...   197   1e-50
sp|P79013|RS11_SCHPO  40S ribosomal protein S11                   172   2e-43
sp|P17093|RS11_SOYBN  40S ribosomal protein S11                   165   5e-41
sp|P42756|RS11_DUNTE  40S ribosomal protein S11                   164   8e-41
sp|P26781|RS11_YEAST  40S ribosomal protein S11 (S18) (YS12)...   164   8e-41
sp|P16181|RS11A_ARATH  40S ribosomal protein S11-1                164   1e-40
sp|O65569|RS11B_ARATH  40S ribosomal protein S11-2                163   1e-40
sp|Q9M5M1|RS11_EUPES  40S ribosomal protein S11                   163   1e-40
sp|P25460|RS11_MAIZE  40S ribosomal protein S11                   162   3e-40
>sp|P41115|RS11_XENLA 40S ribosomal protein S11
          Length = 158

 Score =  201 bits (512), Expect = 5e-52
 Identities = 97/139 (69%), Positives = 114/139 (82%), Gaps = 11/139 (7%)
 Frame = +2

Query: 2   QTERAFQKQE---------VRGKKGSRN--RYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
           QTERA+QKQ          + G+ G     RYY+S+GLG+KTpreAI+GTY+DKKCPFT 
Sbjct: 5   QTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTpreAIDGTYIDKKCPFTG 64

Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
           +V IRGRILSG+V K+KM+ T+VIRRDYLHY+RKYNRFEKRHKNMSVH+SP FRD+ VGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGD 124

Query: 329 TVIVGECRPLAKTVSFNVL 385
           TV VGECRPL+KTV FNVL
Sbjct: 125 TVTVGECRPLSKTVRFNVL 143
>sp|P62282|RS11_RAT 40S ribosomal protein S11
 sp|P62281|RS11_MOUSE 40S ribosomal protein S11
 sp|P62280|RS11_HUMAN 40S ribosomal protein S11
 sp|P61270|RS11_MACFA 40S ribosomal protein S11
          Length = 158

 Score =  197 bits (500), Expect = 1e-50
 Identities = 95/139 (68%), Positives = 112/139 (80%), Gaps = 11/139 (7%)
 Frame = +2

Query: 2   QTERAFQKQE---------VRGKKGSRN--RYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
           QTERA+QKQ          + G+ G     RYYK+IGLG+KTP+EAI GTY+DKKCPFT 
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
           +V IRGRILSG+V K+KM+ T+VIRRDYLHY+RKYNRFEKRHKNMSVH+SP FRD+ +GD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 329 TVIVGECRPLAKTVSFNVL 385
            V VGECRPL+KTV FNVL
Sbjct: 125 IVTVGECRPLSKTVRFNVL 143
>sp|P79013|RS11_SCHPO 40S ribosomal protein S11
          Length = 152

 Score =  172 bits (437), Expect = 2e-43
 Identities = 84/131 (64%), Positives = 102/131 (77%), Gaps = 3/131 (2%)
 Frame = +2

Query: 2   QTERAFQKQE---VRGKKGSRNRYYKSIGLGYKTpreAINGTYVDKKCPFTSDVKIRGRI 172
           Q+ERAFQKQ       KKG+  R+YK +GLG+KTP EAI G YVDKKCPF   V IRGRI
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRI 67

Query: 173 LSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGDTVIVGECR 352
           L+G V+  KM  T++IRR+YLH++ KYNR+EKRHKN++ HVSPAFR I+ GD V VG+CR
Sbjct: 68  LTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCR 126

Query: 353 PLAKTVSFNVL 385
           PL+KTV FNVL
Sbjct: 127 PLSKTVRFNVL 137
>sp|P17093|RS11_SOYBN 40S ribosomal protein S11
          Length = 159

 Score =  165 bits (417), Expect = 5e-41
 Identities = 80/139 (57%), Positives = 104/139 (74%), Gaps = 11/139 (7%)
 Frame = +2

Query: 2   QTERAFQKQEV---------RGKKGSR--NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
           QTE+AF KQ           +GK+  +  NR++KSIGLG+KTpreAI GTY+DKKCPFT 
Sbjct: 4   QTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTpreAIEGTYIDKKCPFTG 63

Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
           +V IRGRIL+G     KM  T+++RR+YLH+++KY R+EKRH N+  H+SPAFR +  GD
Sbjct: 64  NVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFR-VKEGD 122

Query: 329 TVIVGECRPLAKTVSFNVL 385
            VI+G+CRPL+KTV FNVL
Sbjct: 123 HVIIGQCRPLSKTVRFNVL 141
>sp|P42756|RS11_DUNTE 40S ribosomal protein S11
          Length = 157

 Score =  164 bits (415), Expect = 8e-41
 Identities = 79/138 (57%), Positives = 103/138 (74%), Gaps = 10/138 (7%)
 Frame = +2

Query: 2   QTERAFQKQ----------EVRGKKGSRNRYYKSIGLGYKTpreAINGTYVDKKCPFTSD 151
           QTE+AFQKQ          E +    S +R++K++GL +KTP+EAI+G YVDKKCPFT +
Sbjct: 4   QTEKAFQKQVGVTGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGN 63

Query: 152 VKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGDT 331
           V IRGRIL+G+V   KM  T+++RRDYLH++ KY R+EKRH N+  HVSP FR  D GDT
Sbjct: 64  VSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRD-GDT 122

Query: 332 VIVGECRPLAKTVSFNVL 385
           VI+G+CRPL+KT+ FNVL
Sbjct: 123 VIIGQCRPLSKTIRFNVL 140
>sp|P26781|RS11_YEAST 40S ribosomal protein S11 (S18) (YS12) (RP41)
          Length = 156

 Score =  164 bits (415), Expect = 8e-41
 Identities = 82/135 (60%), Positives = 105/135 (77%), Gaps = 7/135 (5%)
 Frame = +2

Query: 2   QTERAFQKQ-------EVRGKKGSRNRYYKSIGLGYKTpreAINGTYVDKKCPFTSDVKI 160
           Q+ERAFQKQ       +V+  K ++ R+YK+ GLG+KTP+ AI G+Y+DKKCPFT  V I
Sbjct: 8   QSERAFQKQPHIFNNPKVKTSKRTK-RWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSI 66

Query: 161 RGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGDTVIV 340
           RG+IL+G V+  KM  T+VIRR YLHY+ KYNR+EKRHKN+ VHVSPAFR + VGD V V
Sbjct: 67  RGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFR-VQVGDIVTV 125

Query: 341 GECRPLAKTVSFNVL 385
           G+CRP++KTV FNV+
Sbjct: 126 GQCRPISKTVRFNVV 140
>sp|P16181|RS11A_ARATH 40S ribosomal protein S11-1
          Length = 160

 Score =  164 bits (414), Expect = 1e-40
 Identities = 81/139 (58%), Positives = 102/139 (73%), Gaps = 11/139 (7%)
 Frame = +2

Query: 2   QTERAFQKQ------EVRGKKGSR-----NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
           QTE+AF KQ        +  KG R     NR++K+IGLG+KTpreAI+G YVDKKCPFT 
Sbjct: 4   QTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTpreAIDGAYVDKKCPFTG 63

Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
            V IRGRIL+G     KM+ T+++RRDYLH+V+KY R+EKRH N+  HVSP FR +  GD
Sbjct: 64  TVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGD 122

Query: 329 TVIVGECRPLAKTVSFNVL 385
            +I+G+CRPL+KTV FNVL
Sbjct: 123 HIIIGQCRPLSKTVRFNVL 141
>sp|O65569|RS11B_ARATH 40S ribosomal protein S11-2
          Length = 159

 Score =  163 bits (413), Expect = 1e-40
 Identities = 81/139 (58%), Positives = 101/139 (72%), Gaps = 11/139 (7%)
 Frame = +2

Query: 2   QTERAFQKQ------EVRGKKGSR-----NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
           QTE+AF KQ        +  KG R     NR++K+IGLG+KTpreAI GTY+D+KCPFT 
Sbjct: 4   QTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTpreAIEGTYIDQKCPFTG 63

Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
            V IRGRILSG     KM+ T+++RRDYLH+V+KY R+EKRH N+  HVSP FR +  GD
Sbjct: 64  TVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGD 122

Query: 329 TVIVGECRPLAKTVSFNVL 385
            V +G+CRPL+KTV FNVL
Sbjct: 123 RVTIGQCRPLSKTVRFNVL 141
>sp|Q9M5M1|RS11_EUPES 40S ribosomal protein S11
          Length = 159

 Score =  163 bits (413), Expect = 1e-40
 Identities = 80/139 (57%), Positives = 103/139 (74%), Gaps = 11/139 (7%)
 Frame = +2

Query: 2   QTERAFQKQEV---------RGKKGSR--NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
           QTE+AF KQ           +GK+  +  NR++KSIGLG+KTpreAI+GTY+DKKCPFT 
Sbjct: 4   QTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTpreAIDGTYIDKKCPFTG 63

Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
            V IRGRIL+G     KM  T+++RR+YLH+++KY R+EKRH N+  HVSP FR +  GD
Sbjct: 64  TVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFR-VKEGD 122

Query: 329 TVIVGECRPLAKTVSFNVL 385
            VI+G+CRPL+KTV FNVL
Sbjct: 123 HVIIGQCRPLSKTVRFNVL 141
>sp|P25460|RS11_MAIZE 40S ribosomal protein S11
          Length = 159

 Score =  162 bits (410), Expect = 3e-40
 Identities = 79/139 (56%), Positives = 102/139 (73%), Gaps = 11/139 (7%)
 Frame = +2

Query: 2   QTERAFQKQEV---------RGKKGSR--NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
           QTE+AF KQ           +GKK  +  NR++KSIGLG+KTpreAI GTY+DKKCPFT 
Sbjct: 4   QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTpreAIEGTYIDKKCPFTG 63

Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
            V IRGRI++G     KM  T+++RR+YLH+V+KY R+EKRH N+  H+SP FR +  GD
Sbjct: 64  TVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGD 122

Query: 329 TVIVGECRPLAKTVSFNVL 385
            VI+G+CRPL+KTV FNV+
Sbjct: 123 HVIIGQCRPLSKTVRFNVV 141
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,211,071
Number of Sequences: 369166
Number of extensions: 750415
Number of successful extensions: 2477
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2449
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)