Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_J22
(453 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41115|RS11_XENLA 40S ribosomal protein S11 201 5e-52
sp|P62282|RS11_RAT 40S ribosomal protein S11 >gi|54039310|s... 197 1e-50
sp|P79013|RS11_SCHPO 40S ribosomal protein S11 172 2e-43
sp|P17093|RS11_SOYBN 40S ribosomal protein S11 165 5e-41
sp|P42756|RS11_DUNTE 40S ribosomal protein S11 164 8e-41
sp|P26781|RS11_YEAST 40S ribosomal protein S11 (S18) (YS12)... 164 8e-41
sp|P16181|RS11A_ARATH 40S ribosomal protein S11-1 164 1e-40
sp|O65569|RS11B_ARATH 40S ribosomal protein S11-2 163 1e-40
sp|Q9M5M1|RS11_EUPES 40S ribosomal protein S11 163 1e-40
sp|P25460|RS11_MAIZE 40S ribosomal protein S11 162 3e-40
>sp|P41115|RS11_XENLA 40S ribosomal protein S11
Length = 158
Score = 201 bits (512), Expect = 5e-52
Identities = 97/139 (69%), Positives = 114/139 (82%), Gaps = 11/139 (7%)
Frame = +2
Query: 2 QTERAFQKQE---------VRGKKGSRN--RYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
QTERA+QKQ + G+ G RYY+S+GLG+KTpreAI+GTY+DKKCPFT
Sbjct: 5 QTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTpreAIDGTYIDKKCPFTG 64
Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
+V IRGRILSG+V K+KM+ T+VIRRDYLHY+RKYNRFEKRHKNMSVH+SP FRD+ VGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGD 124
Query: 329 TVIVGECRPLAKTVSFNVL 385
TV VGECRPL+KTV FNVL
Sbjct: 125 TVTVGECRPLSKTVRFNVL 143
>sp|P62282|RS11_RAT 40S ribosomal protein S11
sp|P62281|RS11_MOUSE 40S ribosomal protein S11
sp|P62280|RS11_HUMAN 40S ribosomal protein S11
sp|P61270|RS11_MACFA 40S ribosomal protein S11
Length = 158
Score = 197 bits (500), Expect = 1e-50
Identities = 95/139 (68%), Positives = 112/139 (80%), Gaps = 11/139 (7%)
Frame = +2
Query: 2 QTERAFQKQE---------VRGKKGSRN--RYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
QTERA+QKQ + G+ G RYYK+IGLG+KTP+EAI GTY+DKKCPFT
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
+V IRGRILSG+V K+KM+ T+VIRRDYLHY+RKYNRFEKRHKNMSVH+SP FRD+ +GD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 329 TVIVGECRPLAKTVSFNVL 385
V VGECRPL+KTV FNVL
Sbjct: 125 IVTVGECRPLSKTVRFNVL 143
>sp|P79013|RS11_SCHPO 40S ribosomal protein S11
Length = 152
Score = 172 bits (437), Expect = 2e-43
Identities = 84/131 (64%), Positives = 102/131 (77%), Gaps = 3/131 (2%)
Frame = +2
Query: 2 QTERAFQKQE---VRGKKGSRNRYYKSIGLGYKTpreAINGTYVDKKCPFTSDVKIRGRI 172
Q+ERAFQKQ KKG+ R+YK +GLG+KTP EAI G YVDKKCPF V IRGRI
Sbjct: 8 QSERAFQKQPHIFQNAKKGAGRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRI 67
Query: 173 LSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGDTVIVGECR 352
L+G V+ KM T++IRR+YLH++ KYNR+EKRHKN++ HVSPAFR I+ GD V VG+CR
Sbjct: 68 LTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCR 126
Query: 353 PLAKTVSFNVL 385
PL+KTV FNVL
Sbjct: 127 PLSKTVRFNVL 137
>sp|P17093|RS11_SOYBN 40S ribosomal protein S11
Length = 159
Score = 165 bits (417), Expect = 5e-41
Identities = 80/139 (57%), Positives = 104/139 (74%), Gaps = 11/139 (7%)
Frame = +2
Query: 2 QTERAFQKQEV---------RGKKGSR--NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
QTE+AF KQ +GK+ + NR++KSIGLG+KTpreAI GTY+DKKCPFT
Sbjct: 4 QTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTpreAIEGTYIDKKCPFTG 63
Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
+V IRGRIL+G KM T+++RR+YLH+++KY R+EKRH N+ H+SPAFR + GD
Sbjct: 64 NVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFR-VKEGD 122
Query: 329 TVIVGECRPLAKTVSFNVL 385
VI+G+CRPL+KTV FNVL
Sbjct: 123 HVIIGQCRPLSKTVRFNVL 141
>sp|P42756|RS11_DUNTE 40S ribosomal protein S11
Length = 157
Score = 164 bits (415), Expect = 8e-41
Identities = 79/138 (57%), Positives = 103/138 (74%), Gaps = 10/138 (7%)
Frame = +2
Query: 2 QTERAFQKQ----------EVRGKKGSRNRYYKSIGLGYKTpreAINGTYVDKKCPFTSD 151
QTE+AFQKQ E + S +R++K++GL +KTP+EAI+G YVDKKCPFT +
Sbjct: 4 QTEKAFQKQVGVTGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGN 63
Query: 152 VKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGDT 331
V IRGRIL+G+V KM T+++RRDYLH++ KY R+EKRH N+ HVSP FR D GDT
Sbjct: 64 VSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRD-GDT 122
Query: 332 VIVGECRPLAKTVSFNVL 385
VI+G+CRPL+KT+ FNVL
Sbjct: 123 VIIGQCRPLSKTIRFNVL 140
>sp|P26781|RS11_YEAST 40S ribosomal protein S11 (S18) (YS12) (RP41)
Length = 156
Score = 164 bits (415), Expect = 8e-41
Identities = 82/135 (60%), Positives = 105/135 (77%), Gaps = 7/135 (5%)
Frame = +2
Query: 2 QTERAFQKQ-------EVRGKKGSRNRYYKSIGLGYKTpreAINGTYVDKKCPFTSDVKI 160
Q+ERAFQKQ +V+ K ++ R+YK+ GLG+KTP+ AI G+Y+DKKCPFT V I
Sbjct: 8 QSERAFQKQPHIFNNPKVKTSKRTK-RWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSI 66
Query: 161 RGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGDTVIV 340
RG+IL+G V+ KM T+VIRR YLHY+ KYNR+EKRHKN+ VHVSPAFR + VGD V V
Sbjct: 67 RGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFR-VQVGDIVTV 125
Query: 341 GECRPLAKTVSFNVL 385
G+CRP++KTV FNV+
Sbjct: 126 GQCRPISKTVRFNVV 140
>sp|P16181|RS11A_ARATH 40S ribosomal protein S11-1
Length = 160
Score = 164 bits (414), Expect = 1e-40
Identities = 81/139 (58%), Positives = 102/139 (73%), Gaps = 11/139 (7%)
Frame = +2
Query: 2 QTERAFQKQ------EVRGKKGSR-----NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
QTE+AF KQ + KG R NR++K+IGLG+KTpreAI+G YVDKKCPFT
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTpreAIDGAYVDKKCPFTG 63
Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
V IRGRIL+G KM+ T+++RRDYLH+V+KY R+EKRH N+ HVSP FR + GD
Sbjct: 64 TVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGD 122
Query: 329 TVIVGECRPLAKTVSFNVL 385
+I+G+CRPL+KTV FNVL
Sbjct: 123 HIIIGQCRPLSKTVRFNVL 141
>sp|O65569|RS11B_ARATH 40S ribosomal protein S11-2
Length = 159
Score = 163 bits (413), Expect = 1e-40
Identities = 81/139 (58%), Positives = 101/139 (72%), Gaps = 11/139 (7%)
Frame = +2
Query: 2 QTERAFQKQ------EVRGKKGSR-----NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
QTE+AF KQ + KG R NR++K+IGLG+KTpreAI GTY+D+KCPFT
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTpreAIEGTYIDQKCPFTG 63
Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
V IRGRILSG KM+ T+++RRDYLH+V+KY R+EKRH N+ HVSP FR + GD
Sbjct: 64 TVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGD 122
Query: 329 TVIVGECRPLAKTVSFNVL 385
V +G+CRPL+KTV FNVL
Sbjct: 123 RVTIGQCRPLSKTVRFNVL 141
>sp|Q9M5M1|RS11_EUPES 40S ribosomal protein S11
Length = 159
Score = 163 bits (413), Expect = 1e-40
Identities = 80/139 (57%), Positives = 103/139 (74%), Gaps = 11/139 (7%)
Frame = +2
Query: 2 QTERAFQKQEV---------RGKKGSR--NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
QTE+AF KQ +GK+ + NR++KSIGLG+KTpreAI+GTY+DKKCPFT
Sbjct: 4 QTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTpreAIDGTYIDKKCPFTG 63
Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
V IRGRIL+G KM T+++RR+YLH+++KY R+EKRH N+ HVSP FR + GD
Sbjct: 64 TVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFR-VKEGD 122
Query: 329 TVIVGECRPLAKTVSFNVL 385
VI+G+CRPL+KTV FNVL
Sbjct: 123 HVIIGQCRPLSKTVRFNVL 141
>sp|P25460|RS11_MAIZE 40S ribosomal protein S11
Length = 159
Score = 162 bits (410), Expect = 3e-40
Identities = 79/139 (56%), Positives = 102/139 (73%), Gaps = 11/139 (7%)
Frame = +2
Query: 2 QTERAFQKQEV---------RGKKGSR--NRYYKSIGLGYKTpreAINGTYVDKKCPFTS 148
QTE+AF KQ +GKK + NR++KSIGLG+KTpreAI GTY+DKKCPFT
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTpreAIEGTYIDKKCPFTG 63
Query: 149 DVKIRGRILSGIVMKLKMKGTLVIRRDYLHYVRKYNRFEKRHKNMSVHVSPAFRDIDVGD 328
V IRGRI++G KM T+++RR+YLH+V+KY R+EKRH N+ H+SP FR + GD
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGD 122
Query: 329 TVIVGECRPLAKTVSFNVL 385
VI+G+CRPL+KTV FNV+
Sbjct: 123 HVIIGQCRPLSKTVRFNVV 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,211,071
Number of Sequences: 369166
Number of extensions: 750415
Number of successful extensions: 2477
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2449
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)