Planaria EST Database


DrC_02813

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02813
         (611 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09477|YP99_CAEEL  Hypothetical C28H8.9 in chromosome III       69   7e-12
sp|Q92785|REQU_HUMAN  Zinc-finger protein ubi-d4 (Requiem) (...    66   6e-11
sp|Q61103|REQU_MOUSE  Zinc-finger protein ubi-d4 (Requiem) (...    66   6e-11
sp|P58268|REQU_CHICK  Zinc-finger protein ubi-d4 (Requiem) (...    66   6e-11
sp|P58270|DPF3_CHICK  Zinc-finger protein DPF3 (cer-d4)            66   6e-11
sp|Q9W636|REQUB_XENLA  Zinc-finger protein ubi-d4 B (Requiem...    64   3e-10
sp|P56163|DPF1_RAT  Zinc-finger protein neuro-d4 (D4, zinc a...    63   5e-10
sp|Q92782|DPF1_HUMAN  Zinc-finger protein neuro-d4 (D4, zinc...    63   5e-10
sp|Q9QX66|DPF1_MOUSE  Zinc-finger protein neuro-d4 (D4, zinc...    63   5e-10
sp|Q9W638|REQUA_XENLA  Zinc-finger protein ubi-d4 A (Requiem...    62   9e-10
>sp|Q09477|YP99_CAEEL Hypothetical C28H8.9 in chromosome III
          Length = 372

 Score = 69.3 bits (168), Expect = 7e-12
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = +2

Query: 446 SPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNFSENM 595
           SP+  I  SCDFC G+   NK T LPE ++ C DC RS HPSCLNF++N+
Sbjct: 248 SPSIEISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGHPSCLNFNQNV 297
>sp|Q92785|REQU_HUMAN Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response zinc
           finger protein) (D4, zinc and double PHD fingers family
           2)
          Length = 391

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +2

Query: 398 PTPPME-TEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSC 574
           PTP  + +E +     P         CDFCLG    NKKTG PE+++ CSDC RS HPSC
Sbjct: 247 PTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSC 306

Query: 575 LNFSENMRFSV 607
           L F+  M  +V
Sbjct: 307 LQFTPVMMAAV 317
>sp|Q61103|REQU_MOUSE Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response zinc
           finger protein) (D4, zinc and double PHD fingers family
           2)
          Length = 391

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +2

Query: 398 PTPPME-TEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSC 574
           PTP  + +E +     P         CDFCLG    NKKTG PE+++ CSDC RS HPSC
Sbjct: 247 PTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSC 306

Query: 575 LNFSENMRFSV 607
           L F+  M  +V
Sbjct: 307 LQFTPVMMAAV 317
>sp|P58268|REQU_CHICK Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response zinc
           finger protein)
          Length = 405

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +2

Query: 398 PTPPME-TEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSC 574
           PTP  + +E +     P         CDFCLG    NKKTG PE+++ CSDC RS HPSC
Sbjct: 261 PTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSC 320

Query: 575 LNFSENMRFSV 607
           L F+  M  +V
Sbjct: 321 LQFTPVMMAAV 331
>sp|P58270|DPF3_CHICK Zinc-finger protein DPF3 (cer-d4)
          Length = 427

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
 Frame = +2

Query: 422 HRPRSHAPSPTTPIKIS----CDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNFSE 589
           HR  +H P       I     CDFCLG    NKK+G PE+++ CSDC RS HP+CL F+ 
Sbjct: 290 HRNENHKPQKGPDGVIIPNNYCDFCLGGSNMNKKSGRPEELVSCSDCGRSGHPTCLQFTT 349

Query: 590 NMRFSV 607
           NM  +V
Sbjct: 350 NMTEAV 355
>sp|Q9W636|REQUB_XENLA Zinc-finger protein ubi-d4 B (Requiem B) (xReq B) (Apoptosis
           response zinc finger protein B)
          Length = 366

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +2

Query: 398 PTPPME-TEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSC 574
           PTP M  +E +     P         CDFCLG    NKK+  PE+++ CSDC RS HPSC
Sbjct: 224 PTPIMHRSEEQKSKKGPDGLALPNNYCDFCLGDSNTNKKSNQPEELVSCSDCGRSGHPSC 283

Query: 575 LNFSENMRFSV 607
           L F+  M  +V
Sbjct: 284 LQFTPVMMAAV 294
>sp|P56163|DPF1_RAT Zinc-finger protein neuro-d4 (D4, zinc and double PHD fingers
           family 1)
          Length = 397

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 32/68 (47%), Positives = 40/68 (58%)
 Frame = +2

Query: 404 PPMETEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNF 583
           P  + +H  +  AP  T      CDFCLG    +KKTG PE +I C+DC RS HPSCL F
Sbjct: 252 PEAQRKHTAKK-APDGTVIPNGYCDFCLGG---SKKTGCPEDLISCADCGRSGHPSCLQF 307

Query: 584 SENMRFSV 607
           + NM  +V
Sbjct: 308 TVNMTAAV 315
>sp|Q92782|DPF1_HUMAN Zinc-finger protein neuro-d4 (D4, zinc and double PHD fingers
           family 1)
          Length = 353

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 32/68 (47%), Positives = 40/68 (58%)
 Frame = +2

Query: 404 PPMETEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNF 583
           P  + +H  +  AP  T      CDFCLG    +KKTG PE +I C+DC RS HPSCL F
Sbjct: 208 PEAQRKHTAKK-APDGTVIPNGYCDFCLGG---SKKTGCPEDLISCADCGRSGHPSCLQF 263

Query: 584 SENMRFSV 607
           + NM  +V
Sbjct: 264 TVNMTAAV 271
>sp|Q9QX66|DPF1_MOUSE Zinc-finger protein neuro-d4 (D4, zinc and double PHD fingers
           family 1)
          Length = 387

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 32/68 (47%), Positives = 40/68 (58%)
 Frame = +2

Query: 404 PPMETEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNF 583
           P  + +H  +  AP  T      CDFCLG    +KKTG PE +I C+DC RS HPSCL F
Sbjct: 252 PEAQRKHTAKK-APDGTVIPNGYCDFCLGG---SKKTGCPEDLISCADCGRSGHPSCLQF 307

Query: 584 SENMRFSV 607
           + NM  +V
Sbjct: 308 TVNMTAAV 315
>sp|Q9W638|REQUA_XENLA Zinc-finger protein ubi-d4 A (Requiem A) (xReq A) (Apoptosis
           response zinc finger protein A)
          Length = 388

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 33/73 (45%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = +2

Query: 404 PPMETEHRPRSHAPSPTTPIKIS-----CDFCLGSEMENKKTGLPEQMIKCSDCERSAHP 568
           PP    HRP     S   P  I+     CDFCLG    NKKT   E+++ CSDC RS HP
Sbjct: 245 PPTPIMHRPEEQK-SKKGPDGIALPNNYCDFCLGDSKINKKTNQSEELVSCSDCGRSGHP 303

Query: 569 SCLNFSENMRFSV 607
           SCL F+  M  +V
Sbjct: 304 SCLQFTAVMMAAV 316
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,241,675
Number of Sequences: 369166
Number of extensions: 1226698
Number of successful extensions: 4767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4744
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)