Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_J18
(611 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09477|YP99_CAEEL Hypothetical C28H8.9 in chromosome III 69 7e-12
sp|Q92785|REQU_HUMAN Zinc-finger protein ubi-d4 (Requiem) (... 66 6e-11
sp|Q61103|REQU_MOUSE Zinc-finger protein ubi-d4 (Requiem) (... 66 6e-11
sp|P58268|REQU_CHICK Zinc-finger protein ubi-d4 (Requiem) (... 66 6e-11
sp|P58270|DPF3_CHICK Zinc-finger protein DPF3 (cer-d4) 66 6e-11
sp|Q9W636|REQUB_XENLA Zinc-finger protein ubi-d4 B (Requiem... 64 3e-10
sp|P56163|DPF1_RAT Zinc-finger protein neuro-d4 (D4, zinc a... 63 5e-10
sp|Q92782|DPF1_HUMAN Zinc-finger protein neuro-d4 (D4, zinc... 63 5e-10
sp|Q9QX66|DPF1_MOUSE Zinc-finger protein neuro-d4 (D4, zinc... 63 5e-10
sp|Q9W638|REQUA_XENLA Zinc-finger protein ubi-d4 A (Requiem... 62 9e-10
>sp|Q09477|YP99_CAEEL Hypothetical C28H8.9 in chromosome III
Length = 372
Score = 69.3 bits (168), Expect = 7e-12
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +2
Query: 446 SPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNFSENM 595
SP+ I SCDFC G+ NK T LPE ++ C DC RS HPSCLNF++N+
Sbjct: 248 SPSIEISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGHPSCLNFNQNV 297
>sp|Q92785|REQU_HUMAN Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response zinc
finger protein) (D4, zinc and double PHD fingers family
2)
Length = 391
Score = 66.2 bits (160), Expect = 6e-11
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 398 PTPPME-TEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSC 574
PTP + +E + P CDFCLG NKKTG PE+++ CSDC RS HPSC
Sbjct: 247 PTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSC 306
Query: 575 LNFSENMRFSV 607
L F+ M +V
Sbjct: 307 LQFTPVMMAAV 317
>sp|Q61103|REQU_MOUSE Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response zinc
finger protein) (D4, zinc and double PHD fingers family
2)
Length = 391
Score = 66.2 bits (160), Expect = 6e-11
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 398 PTPPME-TEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSC 574
PTP + +E + P CDFCLG NKKTG PE+++ CSDC RS HPSC
Sbjct: 247 PTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSC 306
Query: 575 LNFSENMRFSV 607
L F+ M +V
Sbjct: 307 LQFTPVMMAAV 317
>sp|P58268|REQU_CHICK Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response zinc
finger protein)
Length = 405
Score = 66.2 bits (160), Expect = 6e-11
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 398 PTPPME-TEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSC 574
PTP + +E + P CDFCLG NKKTG PE+++ CSDC RS HPSC
Sbjct: 261 PTPVSQRSEEQKSKKGPDGLALPNNYCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSC 320
Query: 575 LNFSENMRFSV 607
L F+ M +V
Sbjct: 321 LQFTPVMMAAV 331
>sp|P58270|DPF3_CHICK Zinc-finger protein DPF3 (cer-d4)
Length = 427
Score = 66.2 bits (160), Expect = 6e-11
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +2
Query: 422 HRPRSHAPSPTTPIKIS----CDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNFSE 589
HR +H P I CDFCLG NKK+G PE+++ CSDC RS HP+CL F+
Sbjct: 290 HRNENHKPQKGPDGVIIPNNYCDFCLGGSNMNKKSGRPEELVSCSDCGRSGHPTCLQFTT 349
Query: 590 NMRFSV 607
NM +V
Sbjct: 350 NMTEAV 355
>sp|Q9W636|REQUB_XENLA Zinc-finger protein ubi-d4 B (Requiem B) (xReq B) (Apoptosis
response zinc finger protein B)
Length = 366
Score = 63.9 bits (154), Expect = 3e-10
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 398 PTPPME-TEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSC 574
PTP M +E + P CDFCLG NKK+ PE+++ CSDC RS HPSC
Sbjct: 224 PTPIMHRSEEQKSKKGPDGLALPNNYCDFCLGDSNTNKKSNQPEELVSCSDCGRSGHPSC 283
Query: 575 LNFSENMRFSV 607
L F+ M +V
Sbjct: 284 LQFTPVMMAAV 294
>sp|P56163|DPF1_RAT Zinc-finger protein neuro-d4 (D4, zinc and double PHD fingers
family 1)
Length = 397
Score = 63.2 bits (152), Expect = 5e-10
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = +2
Query: 404 PPMETEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNF 583
P + +H + AP T CDFCLG +KKTG PE +I C+DC RS HPSCL F
Sbjct: 252 PEAQRKHTAKK-APDGTVIPNGYCDFCLGG---SKKTGCPEDLISCADCGRSGHPSCLQF 307
Query: 584 SENMRFSV 607
+ NM +V
Sbjct: 308 TVNMTAAV 315
>sp|Q92782|DPF1_HUMAN Zinc-finger protein neuro-d4 (D4, zinc and double PHD fingers
family 1)
Length = 353
Score = 63.2 bits (152), Expect = 5e-10
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = +2
Query: 404 PPMETEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNF 583
P + +H + AP T CDFCLG +KKTG PE +I C+DC RS HPSCL F
Sbjct: 208 PEAQRKHTAKK-APDGTVIPNGYCDFCLGG---SKKTGCPEDLISCADCGRSGHPSCLQF 263
Query: 584 SENMRFSV 607
+ NM +V
Sbjct: 264 TVNMTAAV 271
>sp|Q9QX66|DPF1_MOUSE Zinc-finger protein neuro-d4 (D4, zinc and double PHD fingers
family 1)
Length = 387
Score = 63.2 bits (152), Expect = 5e-10
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = +2
Query: 404 PPMETEHRPRSHAPSPTTPIKISCDFCLGSEMENKKTGLPEQMIKCSDCERSAHPSCLNF 583
P + +H + AP T CDFCLG +KKTG PE +I C+DC RS HPSCL F
Sbjct: 252 PEAQRKHTAKK-APDGTVIPNGYCDFCLGG---SKKTGCPEDLISCADCGRSGHPSCLQF 307
Query: 584 SENMRFSV 607
+ NM +V
Sbjct: 308 TVNMTAAV 315
>sp|Q9W638|REQUA_XENLA Zinc-finger protein ubi-d4 A (Requiem A) (xReq A) (Apoptosis
response zinc finger protein A)
Length = 388
Score = 62.4 bits (150), Expect = 9e-10
Identities = 33/73 (45%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 404 PPMETEHRPRSHAPSPTTPIKIS-----CDFCLGSEMENKKTGLPEQMIKCSDCERSAHP 568
PP HRP S P I+ CDFCLG NKKT E+++ CSDC RS HP
Sbjct: 245 PPTPIMHRPEEQK-SKKGPDGIALPNNYCDFCLGDSKINKKTNQSEELVSCSDCGRSGHP 303
Query: 569 SCLNFSENMRFSV 607
SCL F+ M +V
Sbjct: 304 SCLQFTAVMMAAV 316
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,241,675
Number of Sequences: 369166
Number of extensions: 1226698
Number of successful extensions: 4767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4744
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)