Planaria EST Database


DrC_02809

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02809
         (548 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q895I8|FTSK_CLOTE  DNA translocase ftsK                         31   1.7  
sp|P19547|REV_HV1S3  REV protein (Anti-repression transactiv...    29   6.6  
sp|P53552|RLR1_YEAST  Protein RLR1 (Protein THO2)                  29   8.6  
>sp|Q895I8|FTSK_CLOTE DNA translocase ftsK
          Length = 743

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 163 RSIEIEEENIDSLNDDTTKWLRTEAKKASFNRWNKL--TVKQFGSKLK 300
           ++I+ E  +ID LND+ +  L+ E KK   N  NKL  T+  FG + K
Sbjct: 270 KTIDYEFPSIDLLNDNKSIKLKKEDKKELLNNANKLEETLTSFGVEAK 317
>sp|P19547|REV_HV1S3 REV protein (Anti-repression transactivator protein) (ART/TRS)
          Length = 116

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 385 HPEPEALKKYHENLKKKREASPKLVQSRKKRSLDYV-GRLSGFEPDKLPKMDKM 543
           HP PE  ++   N +++     + + S  +R L  V GR S   P +LP +D++
Sbjct: 28  HPSPEGTRQARRNRRRRWRERQRQIHSISERILSTVLGRSSEPVPLQLPPLDRL 81
>sp|P53552|RLR1_YEAST Protein RLR1 (Protein THO2)
          Length = 1597

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 174 FYT--SFLTEIFFICYSINSRVYVHPIHFQTIKSRCIFHFSSSFNINTLEWSIL 19
           F+T  S ++EI  + Y++N +      H++ + +RC         +NTL WS +
Sbjct: 824 FFTDQSAISEIILLLYTLNLKANTQNSHYKILSTRC-------DEMNTLLWSFI 870
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.314    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,167,206
Number of Sequences: 369166
Number of extensions: 838121
Number of successful extensions: 2686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2685
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)