Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_I19
(548 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q895I8|FTSK_CLOTE DNA translocase ftsK 31 1.7
sp|P19547|REV_HV1S3 REV protein (Anti-repression transactiv... 29 6.6
sp|P53552|RLR1_YEAST Protein RLR1 (Protein THO2) 29 8.6
>sp|Q895I8|FTSK_CLOTE DNA translocase ftsK
Length = 743
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 163 RSIEIEEENIDSLNDDTTKWLRTEAKKASFNRWNKL--TVKQFGSKLK 300
++I+ E +ID LND+ + L+ E KK N NKL T+ FG + K
Sbjct: 270 KTIDYEFPSIDLLNDNKSIKLKKEDKKELLNNANKLEETLTSFGVEAK 317
>sp|P19547|REV_HV1S3 REV protein (Anti-repression transactivator protein) (ART/TRS)
Length = 116
Score = 29.3 bits (64), Expect = 6.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 385 HPEPEALKKYHENLKKKREASPKLVQSRKKRSLDYV-GRLSGFEPDKLPKMDKM 543
HP PE ++ N +++ + + S +R L V GR S P +LP +D++
Sbjct: 28 HPSPEGTRQARRNRRRRWRERQRQIHSISERILSTVLGRSSEPVPLQLPPLDRL 81
>sp|P53552|RLR1_YEAST Protein RLR1 (Protein THO2)
Length = 1597
Score = 28.9 bits (63), Expect = 8.6
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 174 FYT--SFLTEIFFICYSINSRVYVHPIHFQTIKSRCIFHFSSSFNINTLEWSIL 19
F+T S ++EI + Y++N + H++ + +RC +NTL WS +
Sbjct: 824 FFTDQSAISEIILLLYTLNLKANTQNSHYKILSTRC-------DEMNTLLWSFI 870
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,167,206
Number of Sequences: 369166
Number of extensions: 838121
Number of successful extensions: 2686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2685
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)