Planaria EST Database


DrC_02808

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02808
         (191 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40792|RAC1_DROME  Ras-related protein Rac1                     51   7e-07
sp|Q6RUV5|RAC1_RAT  Ras-related C3 botulinum toxin substrate...    50   2e-06
sp|P15153|RAC2_HUMAN  Ras-related C3 botulinum toxin substra...    49   5e-06
sp|Q05144|RAC2_MOUSE  Ras-related C3 botulinum toxin substra...    49   5e-06
sp|Q03206|RAC1_CAEEL  RAS-related protein rac-1 (Cell-corpse...    49   5e-06
sp|Q9TU25|RAC2_BOVIN  Ras-related C3 botulinum toxin substra...    48   6e-06
sp|O88931|RAC2_CAVPO  Ras-related C3 botulinum toxin substra...    48   6e-06
sp|P34146|RAC1C_DICDI  RAS-related protein rac1C                   48   8e-06
sp|P60764|RAC3_MOUSE  Ras-related C3 botulinum toxin substra...    47   1e-05
sp|O95916|RAC4_HUMAN  Putative Ras-related C3 botulinum toxi...    46   2e-05
>sp|P40792|RAC1_DROME Ras-related protein Rac1
          Length = 192

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 26/33 (78%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCP-KQKKSKTRC 96
           CSALTQ GLKTVFDEAIR VLCP  Q KSK +C
Sbjct: 157 CSALTQKGLKTVFDEAIRSVLCPVLQPKSKRKC 189
>sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
 sp|P63001|RAC1_MOUSE Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
 sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Ras-like
           protein TC25)
 sp|P62999|RAC1_CANFA Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Rac2)
 sp|P62998|RAC1_BOVIN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
          Length = 192

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 25/33 (75%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCPKQ-KKSKTRC 96
           CSALTQ GLKTVFDEAIR VLCP   KK K +C
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKC 189
>sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (Small G
           protein) (GX)
          Length = 192

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 22/31 (70%), Positives = 25/31 (80%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
           CSALTQ GLKTVFDEAIR VLCP+  + + R
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPQPTRQQKR 187
>sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (EN-7
           protein)
          Length = 192

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 22/31 (70%), Positives = 25/31 (80%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
           CSALTQ GLKTVFDEAIR VLCP+  + + R
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPQPTRQQKR 187
>sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse engulfment protein ced-10)
           (CErac1)
          Length = 191

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCPKQKKSKTRC 96
           CSALTQ GLK VFDEAIR VL P Q+  K++C
Sbjct: 157 CSALTQRGLKQVFDEAIRAVLTPPQRAKKSKC 188
>sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
          Length = 192

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 22/31 (70%), Positives = 25/31 (80%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
           CSALTQ GLKTVFDEAIR VLCP+  + + R
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPQPTRPQKR 187
>sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
          Length = 192

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 22/31 (70%), Positives = 25/31 (80%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
           CSALTQ GLKTVFDEAIR VLCP+  + + R
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPQPTRPQKR 187
>sp|P34146|RAC1C_DICDI RAS-related protein rac1C
          Length = 193

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
           CSALTQ GLKTVFDEAIR V+ P  KKSK++
Sbjct: 157 CSALTQKGLKTVFDEAIRSVINPPVKKSKSK 187
>sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
 sp|P60763|RAC3_HUMAN Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
          Length = 192

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 24/33 (72%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCPKQ-KKSKTRC 96
           CSALTQ GLKTVFDEAIR VLCP   KK   +C
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPPPVKKPGKKC 189
>sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxin substrate 4 (p21-Rac4)
          Length = 192

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = +1

Query: 1   CSALTQSGLKTVFDEAIRVVLCPKQ-KKSKTRC 96
           C ALT+ GLKTVFDEAIR VLCP   KK K +C
Sbjct: 157 CLALTRRGLKTVFDEAIRAVLCPPPVKKRKRKC 189
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,621,367
Number of Sequences: 369166
Number of extensions: 264166
Number of successful extensions: 604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1732899140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)