Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_I12
(191 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40792|RAC1_DROME Ras-related protein Rac1 51 7e-07
sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate... 50 2e-06
sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substra... 49 5e-06
sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substra... 49 5e-06
sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse... 49 5e-06
sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substra... 48 6e-06
sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substra... 48 6e-06
sp|P34146|RAC1C_DICDI RAS-related protein rac1C 48 8e-06
sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substra... 47 1e-05
sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxi... 46 2e-05
>sp|P40792|RAC1_DROME Ras-related protein Rac1
Length = 192
Score = 51.2 bits (121), Expect = 7e-07
Identities = 26/33 (78%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCP-KQKKSKTRC 96
CSALTQ GLKTVFDEAIR VLCP Q KSK +C
Sbjct: 157 CSALTQKGLKTVFDEAIRSVLCPVLQPKSKRKC 189
>sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
sp|P63001|RAC1_MOUSE Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Ras-like
protein TC25)
sp|P62999|RAC1_CANFA Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Rac2)
sp|P62998|RAC1_BOVIN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
Length = 192
Score = 50.1 bits (118), Expect = 2e-06
Identities = 25/33 (75%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCPKQ-KKSKTRC 96
CSALTQ GLKTVFDEAIR VLCP KK K +C
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKC 189
>sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (Small G
protein) (GX)
Length = 192
Score = 48.5 bits (114), Expect = 5e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
CSALTQ GLKTVFDEAIR VLCP+ + + R
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPQPTRQQKR 187
>sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (EN-7
protein)
Length = 192
Score = 48.5 bits (114), Expect = 5e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
CSALTQ GLKTVFDEAIR VLCP+ + + R
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPQPTRQQKR 187
>sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse engulfment protein ced-10)
(CErac1)
Length = 191
Score = 48.5 bits (114), Expect = 5e-06
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCPKQKKSKTRC 96
CSALTQ GLK VFDEAIR VL P Q+ K++C
Sbjct: 157 CSALTQRGLKQVFDEAIRAVLTPPQRAKKSKC 188
>sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
Length = 192
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
CSALTQ GLKTVFDEAIR VLCP+ + + R
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPQPTRPQKR 187
>sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
Length = 192
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
CSALTQ GLKTVFDEAIR VLCP+ + + R
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPQPTRPQKR 187
>sp|P34146|RAC1C_DICDI RAS-related protein rac1C
Length = 193
Score = 47.8 bits (112), Expect = 8e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCPKQKKSKTR 93
CSALTQ GLKTVFDEAIR V+ P KKSK++
Sbjct: 157 CSALTQKGLKTVFDEAIRSVINPPVKKSKSK 187
>sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
sp|P60763|RAC3_HUMAN Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
Length = 192
Score = 47.4 bits (111), Expect = 1e-05
Identities = 24/33 (72%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCPKQ-KKSKTRC 96
CSALTQ GLKTVFDEAIR VLCP KK +C
Sbjct: 157 CSALTQRGLKTVFDEAIRAVLCPPPVKKPGKKC 189
>sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxin substrate 4 (p21-Rac4)
Length = 192
Score = 46.2 bits (108), Expect = 2e-05
Identities = 23/33 (69%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 CSALTQSGLKTVFDEAIRVVLCPKQ-KKSKTRC 96
C ALT+ GLKTVFDEAIR VLCP KK K +C
Sbjct: 157 CLALTRRGLKTVFDEAIRAVLCPPPVKKRKRKC 189
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,621,367
Number of Sequences: 369166
Number of extensions: 264166
Number of successful extensions: 604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1732899140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)