Planaria EST Database


DrC_02803

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02803
         (881 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P64963|YM67_MYCTU  Hypothetical protein Rv2267c/MT2329 >g...    32   1.8  
sp|Q8D2R2|ISPH_WIGBR  4-hydroxy-3-methylbut-2-enyl diphospha...    31   5.2  
sp|P41357|L_RINDR  Large structural protein (L protein) (Tra...    30   6.8  
sp|Q6YR87|TILS_ONYPE  tRNA(Ile)-lysidine synthase (tRNA(Ile)...    30   8.9  
sp|P14385|MTTA_THEAQ  Modification methylase TaqI (Adenine-s...    30   8.9  
>sp|P64963|YM67_MYCTU Hypothetical protein Rv2267c/MT2329
 sp|P64964|YM90_MYCBO Hypothetical protein Mb2290c
          Length = 388

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 472 YSIVPYIIEAVREGLTVHGRKQATWDDPTDWIVRSWPWNDLHSSLPISNNPIDPSNLIRL 651
           Y + P  I   +    +HG +Q T+D   D +V ++   DL+  L      +DP+    L
Sbjct: 245 YVVYPSTIHLHKALYRIHGLQQPTFDGLDDKVVSTYV--DLYRKLDEGRELVDPTRFYEL 302

Query: 652 RPEDV 666
           R ED+
Sbjct: 303 RYEDL 307
>sp|Q8D2R2|ISPH_WIGBR 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
          Length = 315

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 67  HHVSSFSEIFNSFLSIQHIRSPFVIGTMSQSNSPNTK 177
           H +   S++ +  + I H   P +IGT+ Q N+PN K
Sbjct: 104 HEIKRASKLRSEVIIIGHKNHPEIIGTIGQYNNPNKK 140
>sp|P41357|L_RINDR Large structural protein (L protein) (Transcriptase) (Replicase)
           [Includes: RNA-directed RNA polymerase ; mRNA
           (guanine-N(7)-)-methyltransferase ; mRNA
           guanylyltransferase ]
          Length = 2183

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = +1

Query: 334 IYIVWQHINKFLESYSSADVTIGPRLFLNCPMNVDNAKAWFVDLWNYSIVPYIIEA---- 501
           +Y+   H    L+S+++ D     ++F+  PM     + +   LW  S +PY+  A    
Sbjct: 705 LYVSDPHCPPDLDSHANLDNVPNDQIFIKYPMG--GIEGYCQKLWTISTIPYLYLAAHES 762

Query: 502 -VREGLTVHGRKQATWDDPTDWIVRSWPWN 588
            VR    V G  Q      T  +  SWP++
Sbjct: 763 GVRIASLVQGDNQTI--AVTKRVPSSWPYH 790
>sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 436

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +1

Query: 1   PQSDSNVSPTSSLPLVIILDNLHHVSSFSEIFNSFLSIQHIRSPFVIGTMSQSNSPNTKN 180
           P +   ++P  +L LVI  D +  +     I  SF+ IQ+I        +   N+P   N
Sbjct: 236 PPNSFALAPFLNLDLVIQKDIILLLLEQQNITKSFIFIQNI--------IKGINNPYKPN 287

Query: 181 LQLHHNFRWVLCTNH 225
           L  H NF W L  ++
Sbjct: 288 LSWHLNFEWHLIKDY 302
>sp|P14385|MTTA_THEAQ Modification methylase TaqI (Adenine-specific methyltransferase
           TaqI) (M.TaqI)
          Length = 421

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 460 DLWNYSIVPYIIEAVREGLTVHGRKQATWDDPTDWIVRSWPWNDLHSSLPISNNPIDPSN 639
           +L ++   P+++ A  +G  V     A WD+      R++PW +    LP     +DPS+
Sbjct: 321 ELRDFYATPHLVVAHTKGTRV----VAAWDE------RAYPWREEFHLLPKEGVRLDPSS 370

Query: 640 LIR 648
           L++
Sbjct: 371 LVQ 373
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,322,980
Number of Sequences: 369166
Number of extensions: 2093351
Number of successful extensions: 4899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4898
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)