Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_H20
(881 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P64963|YM67_MYCTU Hypothetical protein Rv2267c/MT2329 >g... 32 1.8
sp|Q8D2R2|ISPH_WIGBR 4-hydroxy-3-methylbut-2-enyl diphospha... 31 5.2
sp|P41357|L_RINDR Large structural protein (L protein) (Tra... 30 6.8
sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)... 30 8.9
sp|P14385|MTTA_THEAQ Modification methylase TaqI (Adenine-s... 30 8.9
>sp|P64963|YM67_MYCTU Hypothetical protein Rv2267c/MT2329
sp|P64964|YM90_MYCBO Hypothetical protein Mb2290c
Length = 388
Score = 32.3 bits (72), Expect = 1.8
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 472 YSIVPYIIEAVREGLTVHGRKQATWDDPTDWIVRSWPWNDLHSSLPISNNPIDPSNLIRL 651
Y + P I + +HG +Q T+D D +V ++ DL+ L +DP+ L
Sbjct: 245 YVVYPSTIHLHKALYRIHGLQQPTFDGLDDKVVSTYV--DLYRKLDEGRELVDPTRFYEL 302
Query: 652 RPEDV 666
R ED+
Sbjct: 303 RYEDL 307
>sp|Q8D2R2|ISPH_WIGBR 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Length = 315
Score = 30.8 bits (68), Expect = 5.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 67 HHVSSFSEIFNSFLSIQHIRSPFVIGTMSQSNSPNTK 177
H + S++ + + I H P +IGT+ Q N+PN K
Sbjct: 104 HEIKRASKLRSEVIIIGHKNHPEIIGTIGQYNNPNKK 140
>sp|P41357|L_RINDR Large structural protein (L protein) (Transcriptase) (Replicase)
[Includes: RNA-directed RNA polymerase ; mRNA
(guanine-N(7)-)-methyltransferase ; mRNA
guanylyltransferase ]
Length = 2183
Score = 30.4 bits (67), Expect = 6.8
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +1
Query: 334 IYIVWQHINKFLESYSSADVTIGPRLFLNCPMNVDNAKAWFVDLWNYSIVPYIIEA---- 501
+Y+ H L+S+++ D ++F+ PM + + LW S +PY+ A
Sbjct: 705 LYVSDPHCPPDLDSHANLDNVPNDQIFIKYPMG--GIEGYCQKLWTISTIPYLYLAAHES 762
Query: 502 -VREGLTVHGRKQATWDDPTDWIVRSWPWN 588
VR V G Q T + SWP++
Sbjct: 763 GVRIASLVQGDNQTI--AVTKRVPSSWPYH 790
>sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 436
Score = 30.0 bits (66), Expect = 8.9
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +1
Query: 1 PQSDSNVSPTSSLPLVIILDNLHHVSSFSEIFNSFLSIQHIRSPFVIGTMSQSNSPNTKN 180
P + ++P +L LVI D + + I SF+ IQ+I + N+P N
Sbjct: 236 PPNSFALAPFLNLDLVIQKDIILLLLEQQNITKSFIFIQNI--------IKGINNPYKPN 287
Query: 181 LQLHHNFRWVLCTNH 225
L H NF W L ++
Sbjct: 288 LSWHLNFEWHLIKDY 302
>sp|P14385|MTTA_THEAQ Modification methylase TaqI (Adenine-specific methyltransferase
TaqI) (M.TaqI)
Length = 421
Score = 30.0 bits (66), Expect = 8.9
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 460 DLWNYSIVPYIIEAVREGLTVHGRKQATWDDPTDWIVRSWPWNDLHSSLPISNNPIDPSN 639
+L ++ P+++ A +G V A WD+ R++PW + LP +DPS+
Sbjct: 321 ELRDFYATPHLVVAHTKGTRV----VAAWDE------RAYPWREEFHLLPKEGVRLDPSS 370
Query: 640 LIR 648
L++
Sbjct: 371 LVQ 373
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,322,980
Number of Sequences: 369166
Number of extensions: 2093351
Number of successful extensions: 4899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4898
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)