Planaria EST Database


DrC_02800

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02800
         (418 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53464|ACTM_HELTB  Actin, cytoskeletal (M)                     203   1e-52
sp|P53463|ACTM_HELER  Actin, cytoskeletal (M)                     203   1e-52
sp|P92176|ACT2_LUMTE  Actin-2                                     202   2e-52
sp|O16808|ACT_MAYDE  Actin                                        202   3e-52
sp|P91754|ACT_LUMRU  Actin                                        201   5e-52
sp|P92182|ACT1_LUMTE  Actin-1                                     201   5e-52
sp|Q9UVX4|ACT_COPCI  Actin                                        201   5e-52
sp|P10981|ACT5_DROME  Actin-87E                                   201   6e-52
sp|Q26065|ACT_PLAMG  Actin, adductor muscle                       201   6e-52
sp|Q03342|ACT3_ECHGR  Actin-3                                     200   8e-52
>sp|P53464|ACTM_HELTB Actin, cytoskeletal (M)
          Length = 376

 Score =  203 bits (516), Expect = 1e-52
 Identities = 110/140 (78%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
           LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY     T          +R+  R  
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

Query: 359 RETLLHRALDFDAEMRTASA 418
           +E L + ALDF+ EM TA+A
Sbjct: 214 KEKLCYTALDFEQEMATAAA 233
>sp|P53463|ACTM_HELER Actin, cytoskeletal (M)
          Length = 376

 Score =  203 bits (516), Expect = 1e-52
 Identities = 110/140 (78%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
           LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY     T          +R+  R  
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

Query: 359 RETLLHRALDFDAEMRTASA 418
           +E L + ALDF+ EM TA+A
Sbjct: 214 KEKLCYSALDFEQEMATAAA 233
>sp|P92176|ACT2_LUMTE Actin-2
          Length = 376

 Score =  202 bits (515), Expect = 2e-52
 Identities = 110/140 (78%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 153

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
           LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY     T          +R+  R  
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

Query: 359 RETLLHRALDFDAEMRTASA 418
           +E L + ALDF+ EM TASA
Sbjct: 214 KEKLCYVALDFEQEMNTASA 233
>sp|O16808|ACT_MAYDE Actin
          Length = 376

 Score =  202 bits (513), Expect = 3e-52
 Identities = 110/140 (78%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
           LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY     T          +R+  R  
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

Query: 359 RETLLHRALDFDAEMRTASA 418
           +E L + ALDF+ EM TA+A
Sbjct: 214 KEKLSYVALDFEQEMATAAA 233
>sp|P91754|ACT_LUMRU Actin
          Length = 372

 Score =  201 bits (511), Expect = 5e-52
 Identities = 109/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 90  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 149

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
           LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY     T          +R+  R  
Sbjct: 150 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 209

Query: 359 RETLLHRALDFDAEMRTASA 418
           +E L + ALDFD EM TA++
Sbjct: 210 KEKLCYVALDFDQEMGTAAS 229
>sp|P92182|ACT1_LUMTE Actin-1
          Length = 376

 Score =  201 bits (511), Expect = 5e-52
 Identities = 109/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 153

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
           LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY     T          +R+  R  
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

Query: 359 RETLLHRALDFDAEMRTASA 418
           +E L + ALDFD EM TA++
Sbjct: 214 KEKLCYVALDFDQEMGTAAS 233
>sp|Q9UVX4|ACT_COPCI Actin
          Length = 375

 Score =  201 bits (511), Expect = 5e-52
 Identities = 108/139 (77%), Positives = 116/139 (83%), Gaps = 1/139 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPA YVAIQAVLSLYASGRTTGIV
Sbjct: 93  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIV 152

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**DSTGEVQL-HNKQLKRKSWRYQ 358
           LDSGDGVTHTVPIYEG+ALPHAILRLDLAGRDLTDY     GE         +R+  R  
Sbjct: 153 LDSGDGVTHTVPIYEGFALPHAILRLDLAGRDLTDYLIKCLGERGYPFTTTAEREIVRDI 212

Query: 359 RETLLHRALDFDAEMRTAS 415
           +E L + ALDF+ EM+TA+
Sbjct: 213 KEKLCYVALDFEQEMQTAA 231
>sp|P10981|ACT5_DROME Actin-87E
          Length = 376

 Score =  201 bits (510), Expect = 6e-52
 Identities = 109/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
           LDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDY     T          +R+  R  
Sbjct: 154 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

Query: 359 RETLLHRALDFDAEMRTASA 418
           +E L + ALDF+ EM TA+A
Sbjct: 214 KEKLCYVALDFEQEMATAAA 233
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
          Length = 376

 Score =  201 bits (510), Expect = 6e-52
 Identities = 109/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
           LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY     T          +R+  R  
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213

Query: 359 RETLLHRALDFDAEMRTASA 418
           +E L + ALDF+ EM TA++
Sbjct: 214 KEKLCYVALDFENEMATAAS 233
>sp|Q03342|ACT3_ECHGR Actin-3
          Length = 309

 Score =  200 bits (509), Expect = 8e-52
 Identities = 108/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
 Frame = +2

Query: 2   ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
           ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 27  ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTTGIV 86

Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
           LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY     T         ++R+  R  
Sbjct: 87  LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTVEREIVRDI 146

Query: 359 RETLLHRALDFDAEMRTASA 418
           +E L + ALDF+ EM TA++
Sbjct: 147 KEKLCYVALDFEQEMATAAS 166
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,573,219
Number of Sequences: 369166
Number of extensions: 835351
Number of successful extensions: 2851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)