Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_H09
(418 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53464|ACTM_HELTB Actin, cytoskeletal (M) 203 1e-52
sp|P53463|ACTM_HELER Actin, cytoskeletal (M) 203 1e-52
sp|P92176|ACT2_LUMTE Actin-2 202 2e-52
sp|O16808|ACT_MAYDE Actin 202 3e-52
sp|P91754|ACT_LUMRU Actin 201 5e-52
sp|P92182|ACT1_LUMTE Actin-1 201 5e-52
sp|Q9UVX4|ACT_COPCI Actin 201 5e-52
sp|P10981|ACT5_DROME Actin-87E 201 6e-52
sp|Q26065|ACT_PLAMG Actin, adductor muscle 201 6e-52
sp|Q03342|ACT3_ECHGR Actin-3 200 8e-52
>sp|P53464|ACTM_HELTB Actin, cytoskeletal (M)
Length = 376
Score = 203 bits (516), Expect = 1e-52
Identities = 110/140 (78%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY T +R+ R
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213
Query: 359 RETLLHRALDFDAEMRTASA 418
+E L + ALDF+ EM TA+A
Sbjct: 214 KEKLCYTALDFEQEMATAAA 233
>sp|P53463|ACTM_HELER Actin, cytoskeletal (M)
Length = 376
Score = 203 bits (516), Expect = 1e-52
Identities = 110/140 (78%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY T +R+ R
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213
Query: 359 RETLLHRALDFDAEMRTASA 418
+E L + ALDF+ EM TA+A
Sbjct: 214 KEKLCYSALDFEQEMATAAA 233
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 202 bits (515), Expect = 2e-52
Identities = 110/140 (78%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 153
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY T +R+ R
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213
Query: 359 RETLLHRALDFDAEMRTASA 418
+E L + ALDF+ EM TASA
Sbjct: 214 KEKLCYVALDFEQEMNTASA 233
>sp|O16808|ACT_MAYDE Actin
Length = 376
Score = 202 bits (513), Expect = 3e-52
Identities = 110/140 (78%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY T +R+ R
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213
Query: 359 RETLLHRALDFDAEMRTASA 418
+E L + ALDF+ EM TA+A
Sbjct: 214 KEKLSYVALDFEQEMATAAA 233
>sp|P91754|ACT_LUMRU Actin
Length = 372
Score = 201 bits (511), Expect = 5e-52
Identities = 109/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 90 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 149
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY T +R+ R
Sbjct: 150 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 209
Query: 359 RETLLHRALDFDAEMRTASA 418
+E L + ALDFD EM TA++
Sbjct: 210 KEKLCYVALDFDQEMGTAAS 229
>sp|P92182|ACT1_LUMTE Actin-1
Length = 376
Score = 201 bits (511), Expect = 5e-52
Identities = 109/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 153
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY T +R+ R
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213
Query: 359 RETLLHRALDFDAEMRTASA 418
+E L + ALDFD EM TA++
Sbjct: 214 KEKLCYVALDFDQEMGTAAS 233
>sp|Q9UVX4|ACT_COPCI Actin
Length = 375
Score = 201 bits (511), Expect = 5e-52
Identities = 108/139 (77%), Positives = 116/139 (83%), Gaps = 1/139 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPA YVAIQAVLSLYASGRTTGIV
Sbjct: 93 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIV 152
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**DSTGEVQL-HNKQLKRKSWRYQ 358
LDSGDGVTHTVPIYEG+ALPHAILRLDLAGRDLTDY GE +R+ R
Sbjct: 153 LDSGDGVTHTVPIYEGFALPHAILRLDLAGRDLTDYLIKCLGERGYPFTTTAEREIVRDI 212
Query: 359 RETLLHRALDFDAEMRTAS 415
+E L + ALDF+ EM+TA+
Sbjct: 213 KEKLCYVALDFEQEMQTAA 231
>sp|P10981|ACT5_DROME Actin-87E
Length = 376
Score = 201 bits (510), Expect = 6e-52
Identities = 109/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
LDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDY T +R+ R
Sbjct: 154 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213
Query: 359 RETLLHRALDFDAEMRTASA 418
+E L + ALDF+ EM TA+A
Sbjct: 214 KEKLCYVALDFEQEMATAAA 233
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 201 bits (510), Expect = 6e-52
Identities = 109/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 153
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY T +R+ R
Sbjct: 154 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 213
Query: 359 RETLLHRALDFDAEMRTASA 418
+E L + ALDF+ EM TA++
Sbjct: 214 KEKLCYVALDFENEMATAAS 233
>sp|Q03342|ACT3_ECHGR Actin-3
Length = 309
Score = 200 bits (509), Expect = 8e-52
Identities = 108/140 (77%), Positives = 116/140 (82%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIV 181
ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 27 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTTGIV 86
Query: 182 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY**D-STGEVQLHNKQLKRKSWRYQ 358
LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY T ++R+ R
Sbjct: 87 LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTVEREIVRDI 146
Query: 359 RETLLHRALDFDAEMRTASA 418
+E L + ALDF+ EM TA++
Sbjct: 147 KEKLCYVALDFEQEMATAAS 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,573,219
Number of Sequences: 369166
Number of extensions: 835351
Number of successful extensions: 2851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)