Planaria EST Database


DrC_02788

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02788
         (883 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VHR5|P66B_MOUSE  Transcriptional repressor p66 beta (p6...    97   6e-20
sp|Q8WXI9|P66B_HUMAN  Transcriptional repressor p66 beta (p6...    95   3e-19
sp|Q86YP4|P66A_HUMAN  Transcriptional repressor p66 alpha (H...    94   5e-19
sp|Q8CHY6|P66A_MOUSE  Transcriptional repressor p66 alpha (G...    94   5e-19
sp|P15976|GATA1_HUMAN  Erythroid transcription factor (GATA-...    37   0.095
sp|P43429|GATA1_RAT  Erythroid transcription factor (GATA-bi...    36   0.16 
sp|P17679|GATA1_MOUSE  Erythroid transcription factor (GATA-...    36   0.16 
sp|P17678|GATA1_CHICK  Erythroid transcription factor (GATA-...    35   0.21 
sp|P23768|GAT1B_XENLA  GATA-binding factor 1-B (Transcriptio...    35   0.36 
sp|P23767|GAT1A_XENLA  GATA-binding factor 1-A (Transcriptio...    35   0.36 
>sp|Q8VHR5|P66B_MOUSE Transcriptional repressor p66 beta (p66/p68) (GATA zinc finger
           domain-containing protein 2B)
          Length = 594

 Score = 97.1 bits (240), Expect = 6e-20
 Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 8/242 (3%)
 Frame = +3

Query: 180 PGNRTSAHCASNNTTASYTNES--------NKSSSNGPRMTREMAMQALDQQYLARKALL 335
           P + +S  C    ++A Y N +        N+ SS  P  +   AM        A K  L
Sbjct: 301 PQSSSSVPCQRTTSSAIYMNLASHIQPGTVNRVSSPLPSPS---AMSDAANSQAAAKLAL 357

Query: 336 RKQADKALSEVPLARPLQGPMAQSDLNLIPSTATNEFVALVGLEEVVKNLQEYRNLALGH 515
           RKQ +K L E+P  +P   P+    L+ +PS A +EF+ +VGLEEVV+++ + +    G 
Sbjct: 358 RKQLEKTLLEIPPPKP-PAPL----LHFLPSAANSEFIYMVGLEEVVQSVIDSQ----GK 408

Query: 516 NTNEVRMVFTPFNCVQCGTDFTPLWKRERPGSSKVVCESCCGENHRRALQNDYQDKIRLV 695
           N   +  V  PF C QC TDFTP WK+E+ G  K++CE C   N ++AL+ ++ ++++  
Sbjct: 409 NCASLLRV-EPFVCAQCRTDFTPHWKQEKNG--KILCEQCMTSNQKKALKAEHTNRLKNA 465

Query: 696 LKKYQDQERDLDRDYKDMLDSPKKFELFRKEQEKKLMAMNASNTRPSAVASQQGSRTSTG 875
             K   QE+++++               R +Q+  L     S T   AV+S     T   
Sbjct: 466 FVKALQQEQEIEQ---------------RLQQQAAL-----SPTTAPAVSSVSKQETIMR 505

Query: 876 HH 881
           HH
Sbjct: 506 HH 507
>sp|Q8WXI9|P66B_HUMAN Transcriptional repressor p66 beta (p66/p68) (GATA zinc finger
           domain-containing protein 2B)
          Length = 593

 Score = 94.7 bits (234), Expect = 3e-19
 Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 8/242 (3%)
 Frame = +3

Query: 180 PGNRTSAHCASNNTTASYTNES--------NKSSSNGPRMTREMAMQALDQQYLARKALL 335
           P + +S  C    ++A Y N +        N+ SS  P  +   AM        A K  L
Sbjct: 300 PQSSSSVPCQRTTSSAIYMNLASHIQPGTVNRVSSPLPSPS---AMTDAANSQAAAKLAL 356

Query: 336 RKQADKALSEVPLARPLQGPMAQSDLNLIPSTATNEFVALVGLEEVVKNLQEYRNLALGH 515
           RKQ +K L E+P  +P   P+    L+ +PS A +EF+ +VGLEEVV+++ + +    G 
Sbjct: 357 RKQLEKTLLEIPPPKP-PAPL----LHFLPSAANSEFIYMVGLEEVVQSVIDSQ----GK 407

Query: 516 NTNEVRMVFTPFNCVQCGTDFTPLWKRERPGSSKVVCESCCGENHRRALQNDYQDKIRLV 695
           +   +  V  PF C QC TDFTP WK+E+ G  K++CE C   N ++AL+ ++ ++++  
Sbjct: 408 SCASLLRV-EPFVCAQCRTDFTPHWKQEKNG--KILCEQCMTSNQKKALKAEHTNRLKNA 464

Query: 696 LKKYQDQERDLDRDYKDMLDSPKKFELFRKEQEKKLMAMNASNTRPSAVASQQGSRTSTG 875
             K   QE+++++               R +Q+  L     S T   AV+S     T   
Sbjct: 465 FVKALQQEQEIEQ---------------RLQQQAAL-----SPTTAPAVSSVSKQETIMR 504

Query: 876 HH 881
           HH
Sbjct: 505 HH 506
>sp|Q86YP4|P66A_HUMAN Transcriptional repressor p66 alpha (Hp66alpha) (GATA zinc finger
           domain-containing protein 2A)
          Length = 633

 Score = 94.0 bits (232), Expect = 5e-19
 Identities = 50/139 (35%), Positives = 81/139 (58%)
 Frame = +3

Query: 318 ARKALLRKQADKALSEVPLARPLQGPMAQSDLNLIPSTATNEFVALVGLEEVVKNLQEYR 497
           A K  LRKQ +K L E+P  +P        ++N +PS A NEF+ LVGLEEVV+NL E +
Sbjct: 347 AAKLALRKQLEKTLLEIPPPKP-----PAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQ 401

Query: 498 NLALGHNTNEVRMVFTPFNCVQCGTDFTPLWKRERPGSSKVVCESCCGENHRRALQNDYQ 677
               G  +    +   P+ C QC TDFT  W+ E+ G+  ++CE+C   N ++AL+ ++ 
Sbjct: 402 ----GRMSAATVLSREPYMCAQCKTDFTCRWREEKSGA--IMCENCMTTNQKKALKVEHT 455

Query: 678 DKIRLVLKKYQDQERDLDR 734
            +++    K   QE+++++
Sbjct: 456 SRLKAAFVKALQQEQEIEQ 474
>sp|Q8CHY6|P66A_MOUSE Transcriptional repressor p66 alpha (GATA zinc finger
           domain-containing protein 2A)
          Length = 629

 Score = 94.0 bits (232), Expect = 5e-19
 Identities = 59/176 (33%), Positives = 95/176 (53%)
 Frame = +3

Query: 207 ASNNTTASYTNESNKSSSNGPRMTREMAMQALDQQYLARKALLRKQADKALSEVPLARPL 386
           AS   TA  + ++N + ++   +       A  Q   A K  LRKQ +K L E+P  +P 
Sbjct: 307 ASMKGTAVASAQANSTPTSVASVVASAESPASRQA--AAKLALRKQLEKTLLEIPPPKP- 363

Query: 387 QGPMAQSDLNLIPSTATNEFVALVGLEEVVKNLQEYRNLALGHNTNEVRMVFTPFNCVQC 566
                  ++N +PS A NEF+ LVGLEEVV+NL E +   +        +   P+ CVQC
Sbjct: 364 ----PAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRISATAAAAVLSREPYMCVQC 419

Query: 567 GTDFTPLWKRERPGSSKVVCESCCGENHRRALQNDYQDKIRLVLKKYQDQERDLDR 734
            TDFT  W RE+ G+  V+CE+C   N ++AL+ ++  +++    K   QE+++++
Sbjct: 420 KTDFTCRW-REKGGA--VMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQ 472
>sp|P15976|GATA1_HUMAN Erythroid transcription factor (GATA-binding factor 1) (GATA-1)
           (Eryf1) (GF-1) (NF-E1 DNA-binding protein)
          Length = 413

 Score = 36.6 bits (83), Expect = 0.095
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 555 CVQCGTDFTPLWKRERPGSSKVVCESCCGENHRRALQND--YQDKIRLVLKK 704
           CV CG   TPLW+R+R G    +C + CG  H+   QN    + K RL++ K
Sbjct: 204 CVNCGATATPLWRRDRTG--HYLC-NACGLYHKMNGQNRPLIRPKKRLIVSK 252
>sp|P43429|GATA1_RAT Erythroid transcription factor (GATA-binding factor 1) (GATA-1)
           (Eryf1) (GF-1) (NF-E1 DNA-binding protein)
          Length = 413

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 555 CVQCGTDFTPLWKRERPGSSKVVCESCCGENHRRALQND--YQDKIRLVLKK 704
           CV CG   TPLW+R+R G    +C + CG  H+   QN    + K R+++ K
Sbjct: 204 CVNCGATATPLWRRDRTG--HYLC-NACGLYHKMNGQNRPLIRPKKRMIVSK 252
>sp|P17679|GATA1_MOUSE Erythroid transcription factor (GATA-binding factor 1) (GATA-1)
           (Eryf1) (GF-1) (NF-E1 DNA-binding protein)
          Length = 413

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 555 CVQCGTDFTPLWKRERPGSSKVVCESCCGENHRRALQND--YQDKIRLVLKK 704
           CV CG   TPLW+R+R G    +C + CG  H+   QN    + K R+++ K
Sbjct: 204 CVNCGATATPLWRRDRTG--HYLC-NACGLYHKMNGQNRPLIRPKKRMIVSK 252
>sp|P17678|GATA1_CHICK Erythroid transcription factor (GATA-binding factor 1) (GATA-1)
           (Eryf1) (NF-E1 DNA-binding protein) (NF-E1A)
          Length = 304

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 555 CVQCGTDFTPLWKRERPGSSKVVCESCCGENHRRALQND--YQDKIRLVLKK 704
           CV CG   TPLW+R+  G+   +C + CG  HR   QN    + K RL++ K
Sbjct: 110 CVNCGATATPLWRRD--GTGHYLC-NACGLYHRLNGQNRPLIRPKKRLLVSK 158
>sp|P23768|GAT1B_XENLA GATA-binding factor 1-B (Transcription factor xGATA-1B)
          Length = 364

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 555 CVQCGTDFTPLWKRERPGSSKVVCESCCGENHRRALQND--YQDKIRLVLKK 704
           CV CG   TPLW+R+  G    +C + CG  H+   QN    + K RL++ K
Sbjct: 180 CVNCGATVTPLWRRDLSG--HYLC-NACGLYHKMNGQNRPLIRPKKRLIISK 228
>sp|P23767|GAT1A_XENLA GATA-binding factor 1-A (Transcription factor xGATA-1A)
          Length = 359

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 555 CVQCGTDFTPLWKRERPGSSKVVCESCCGENHRRALQND--YQDKIRLVLKK 704
           CV CG   TPLW+R+  G    +C + CG  H+   QN    + K RL++ K
Sbjct: 178 CVNCGATVTPLWRRDMSG--HYLC-NACGLYHKMNGQNRPLIRPKKRLIVSK 226
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,227,241
Number of Sequences: 369166
Number of extensions: 1636216
Number of successful extensions: 6732
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6623
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)