Planaria EST Database


DrC_02787

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02787
         (180 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O07345|CHLD_SYNP7  Magnesium-chelatase subunit chlD (Mg-p...    29   2.9  
sp|Q8G838|CBIO_BIFLO  Cobalt import ATP-binding/permease pro...    29   2.9  
sp|Q9UM82|SPAT2_HUMAN  Spermatogenesis-associated protein 2 ...    29   3.8  
>sp|O07345|CHLD_SYNP7 Magnesium-chelatase subunit chlD (Mg-protoporphyrin IX chelatase)
           (Mg-chelatase subunit D)
          Length = 677

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 160 HDSTHAEQISTKTVKTGDGVPATATAAAPDGRGTL*SAMQSWQPPQQLGEPD 5
           H  T A ++ T   ++GD +      A  DGRG +  A    QP ++  +PD
Sbjct: 558 HGLTQAVRVGTNAAQSGD-IGQVVIVAITDGRGNIPLARSLGQPMEEGEKPD 608
>sp|Q8G838|CBIO_BIFLO Cobalt import ATP-binding/permease protein cbiO
          Length = 780

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -3

Query: 178 TIIFIDHDSTHAEQISTKTVK-----TGDGVPATATAAAP 74
           T++ I HD   AEQI+ + V+        G P TAT   P
Sbjct: 483 TVLIITHDREEAEQIADRVVRMPIAAPASGGPVTATVTEP 522
>sp|Q9UM82|SPAT2_HUMAN Spermatogenesis-associated protein 2 (Spermatogenesis-associated
           protein PD1)
          Length = 520

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 8   GFTELLRRLPRLHC*SQSASPVWCRCGRCGRHTITS 115
           G T+ L RLP LH  S+ ++    RCG C R   T+
Sbjct: 435 GQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATN 470
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,657,091
Number of Sequences: 369166
Number of extensions: 387319
Number of successful extensions: 1455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 68,354,980
effective HSP length: 32
effective length of database: 62,443,460
effective search space used: 1685973420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)