Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_D09
(180 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O07345|CHLD_SYNP7 Magnesium-chelatase subunit chlD (Mg-p... 29 2.9
sp|Q8G838|CBIO_BIFLO Cobalt import ATP-binding/permease pro... 29 2.9
sp|Q9UM82|SPAT2_HUMAN Spermatogenesis-associated protein 2 ... 29 3.8
>sp|O07345|CHLD_SYNP7 Magnesium-chelatase subunit chlD (Mg-protoporphyrin IX chelatase)
(Mg-chelatase subunit D)
Length = 677
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 160 HDSTHAEQISTKTVKTGDGVPATATAAAPDGRGTL*SAMQSWQPPQQLGEPD 5
H T A ++ T ++GD + A DGRG + A QP ++ +PD
Sbjct: 558 HGLTQAVRVGTNAAQSGD-IGQVVIVAITDGRGNIPLARSLGQPMEEGEKPD 608
>sp|Q8G838|CBIO_BIFLO Cobalt import ATP-binding/permease protein cbiO
Length = 780
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = -3
Query: 178 TIIFIDHDSTHAEQISTKTVK-----TGDGVPATATAAAP 74
T++ I HD AEQI+ + V+ G P TAT P
Sbjct: 483 TVLIITHDREEAEQIADRVVRMPIAAPASGGPVTATVTEP 522
>sp|Q9UM82|SPAT2_HUMAN Spermatogenesis-associated protein 2 (Spermatogenesis-associated
protein PD1)
Length = 520
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 8 GFTELLRRLPRLHC*SQSASPVWCRCGRCGRHTITS 115
G T+ L RLP LH S+ ++ RCG C R T+
Sbjct: 435 GQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATN 470
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,657,091
Number of Sequences: 369166
Number of extensions: 387319
Number of successful extensions: 1455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 68,354,980
effective HSP length: 32
effective length of database: 62,443,460
effective search space used: 1685973420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)