Planaria EST Database


DrC_02784

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02784
         (140 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D2H5|TRI42_MOUSE  Tripartite motif protein 42                 29   2.9  
sp|Q8IWZ5|TRI42_HUMAN  Tripartite motif protein 42                 29   2.9  
>sp|Q9D2H5|TRI42_MOUSE Tripartite motif protein 42
          Length = 723

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = -1

Query: 104 CFPLMYISKHNCQFGIFT----PRCHYQC 30
           CFP  Y  + NCQF   T    P CH+ C
Sbjct: 39  CFPCPYKDERNCQFCHCTCAENPNCHWCC 67
>sp|Q8IWZ5|TRI42_HUMAN Tripartite motif protein 42
          Length = 723

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = -1

Query: 104 CFPLMYISKHNCQFGIFT----PRCHYQC 30
           CFP  Y  + NCQF   T    P CH+ C
Sbjct: 39  CFPCPYKDERNCQFCHCTCSESPNCHWCC 67
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,126,408
Number of Sequences: 369166
Number of extensions: 254952
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 68,354,980
effective HSP length: 20
effective length of database: 64,660,280
effective search space used: 1681167280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)