Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_C10
(140 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D2H5|TRI42_MOUSE Tripartite motif protein 42 29 2.9
sp|Q8IWZ5|TRI42_HUMAN Tripartite motif protein 42 29 2.9
>sp|Q9D2H5|TRI42_MOUSE Tripartite motif protein 42
Length = 723
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = -1
Query: 104 CFPLMYISKHNCQFGIFT----PRCHYQC 30
CFP Y + NCQF T P CH+ C
Sbjct: 39 CFPCPYKDERNCQFCHCTCAENPNCHWCC 67
>sp|Q8IWZ5|TRI42_HUMAN Tripartite motif protein 42
Length = 723
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = -1
Query: 104 CFPLMYISKHNCQFGIFT----PRCHYQC 30
CFP Y + NCQF T P CH+ C
Sbjct: 39 CFPCPYKDERNCQFCHCTCSESPNCHWCC 67
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,126,408
Number of Sequences: 369166
Number of extensions: 254952
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 68,354,980
effective HSP length: 20
effective length of database: 64,660,280
effective search space used: 1681167280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)