Planaria EST Database


DrC_02779

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02779
         (847 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32849|RAD5_YEAST  DNA repair protein RAD5                      36   0.12 
sp|O13718|YDZB_SCHPO  Hypothetical protein C14C4.11 in chrom...    32   1.7  
sp|Q03104|MSC1_YEAST  Meiotic sister chromatid recombination...    32   2.9  
sp|P59448|CARB_BUCBP  Carbamoyl-phosphate synthase large cha...    32   2.9  
sp|Q7VRG4|SPEB_BLOFL  Agmatinase (Agmatine ureohydrolase) (AUH)    31   3.8  
sp|P08934|KNG1_RAT  Kininogen-1 precursor [Contains: Kininog...    31   4.9  
sp|P04588|POL_HV1MA  Gag-Pol polyprotein (Pr160Gag-Pol) [Con...    31   4.9  
sp|Q9WUD2|TRPV2_RAT  Transient receptor potential cation cha...    31   4.9  
sp|Q9ET80|JPH1_MOUSE  Junctophilin-1 (Junctophilin type 1) (...    30   8.4  
>sp|P32849|RAD5_YEAST DNA repair protein RAD5
          Length = 1169

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
 Frame = +1

Query: 274  HVVVSRGVQCSEAIIKKLVENDIDSAENNNLFRSHTTERGDIFN------EHNISKEE-- 429
            H++  R V C   +I    END D ++NN L    T E   +        +++ SKEE  
Sbjct: 834  HILRLRQVCCHPGLIGSQDENDEDLSKNNKLVTEQTVELDSLMRVVSERFDNSFSKEELD 893

Query: 430  -------IKSPDNQSIVPLKANV 477
                   +K PDN+S   L+ ++
Sbjct: 894  AMIQRLKVKYPDNKSFQSLECSI 916
>sp|O13718|YDZB_SCHPO Hypothetical protein C14C4.11 in chromosome I
          Length = 734

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
 Frame = +1

Query: 394 DIFNEHNISKEEIKSPDNQSIVPLKANVNPCRNGGIFKRKPEIFTPVTQEPPELRESSKF 573
           +IF+ +N  ++ + +P N   V  K   N   N  +++R+   F      P  + E   +
Sbjct: 163 EIFSLYNTLRDGLSAPSNSVQVKPKHEHNVDYNSSMYRRRTFRF---WVHPDNVMEVKTY 219

Query: 574 FRKHFPLDYKRHRKYFEDDIDSLSATI-----------SNYSLHEKLLRLEE 696
             +H P+ Y   ++ F+ D + +S  +           SN+ L+ + L   E
Sbjct: 220 IMRHLPVLYYSGKQGFDKDQNGVSGILDPISTCLYLDNSNFDLYSQNLERSE 271
>sp|Q03104|MSC1_YEAST Meiotic sister chromatid recombination protein 1
          Length = 513

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 103 TSATNFDDYSDSVDLLTNLHLFNVPVERPSEENNVVNALMGNAQCCF--KRYPGYQAHRH 276
           T +  F  +S   DLL  L  F VPV++ S +++++N    N Q  F   + P Y+ + H
Sbjct: 442 TWSNTFQSWSQE-DLLQYLKSFGVPVKQTSTKDDLINLAKQNTQWLFGTVKEPAYKRYLH 500

Query: 277 VV 282
            V
Sbjct: 501 NV 502
>sp|P59448|CARB_BUCBP Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain)
          Length = 1076

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +1

Query: 607 HRKYFEDD--IDSLSATISNYSLHEKLLRLEENVGFHQIFETVDQNNHKFENNTNMMPSF 780
           H KYF+     D   A +SN S  +K+  +  N+  H +++ +D  + +F N+T  M S 
Sbjct: 488 HFKYFKKKGFSDLRIAQLSNNS-EKKIRSIRYNLKLHPVYKRIDTCSAEFANDTAYMYST 546

Query: 781 QQKDCD 798
            + +C+
Sbjct: 547 WEDECE 552
>sp|Q7VRG4|SPEB_BLOFL Agmatinase (Agmatine ureohydrolase) (AUH)
          Length = 303

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 547 PELRESSKFFRKHFPLDYKRHRKYFEDDIDSLSATISNYSLHEKLLRLEENV 702
           P LR  SKFF     + +  H  Y++++       +  Y+LHEKL+    +V
Sbjct: 131 PVLRAYSKFFGTISIIHFDAHADYYDNNNQYDHGAVILYALHEKLINPNRSV 182
>sp|P08934|KNG1_RAT Kininogen-1 precursor [Contains: Kininogen-1 heavy chain;
           Bradykinin; Kininogen-1 light chain]
          Length = 639

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 751 ENNTNMMPSFQQKDCDFKSSTEAIKGSMTKSL 846
           E N ++   F  +DCDFK + EA  G  T +L
Sbjct: 80  EGNCSVQSGFAWQDCDFKDAEEAATGECTATL 111
>sp|P04588|POL_HV1MA Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein p17
            (MA); Capsid protein p24 (CA); p2 spacer peptide;
            Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
            pol); Protease (Retropepsin) (PR); Reverse
            transcriptase/ribonuclease H (p66 RT); p51 RT; p15;
            Integrase (IN)]
          Length = 1440

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 175  PVERPSEENNVVN---ALMGNAQCCFKRYPGYQAHRHVVVSRGVQCSEAIIKKLVENDID 345
            P++ P +E+  VN    L+G      + YPG +  +   + RG +    I+    E +++
Sbjct: 835  PIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVPLTAEAELE 894

Query: 346  SAENNNLFR 372
             AEN  + +
Sbjct: 895  LAENREILK 903
>sp|Q9WUD2|TRPV2_RAT Transient receptor potential cation channel subfamily V member 2
           (TrpV2) (osm-9-like TRP channel 2) (OTRPC2) (Vanilloid
           receptor-like protein 1) (VRL-1) (Stretch-activated
           channel 2B)
          Length = 761

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 217 LMGNAQCCFKRYPGYQAHRHVVVSRGVQCSEAIIKKLVENDID 345
           L+ NAQC  + Y G+ A    +  R +QC    +K LVEN  D
Sbjct: 151 LLVNAQCTDEFYQGHSALHIAIEKRSLQC----VKLLVENGAD 189
>sp|Q9ET80|JPH1_MOUSE Junctophilin-1 (Junctophilin type 1) (JP-1)
          Length = 660

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 484 CRNGGIFKRKPEIFTPVTQEPPELRESSKFFRK 582
           C+ GG  K  PE    V ++PP  +ES  F+RK
Sbjct: 428 CQEGGDIKENPE--EKVLEKPPSPKESPHFYRK 458
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,502,835
Number of Sequences: 369166
Number of extensions: 1569299
Number of successful extensions: 4635
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4631
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)