Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_B23
(847 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32849|RAD5_YEAST DNA repair protein RAD5 36 0.12
sp|O13718|YDZB_SCHPO Hypothetical protein C14C4.11 in chrom... 32 1.7
sp|Q03104|MSC1_YEAST Meiotic sister chromatid recombination... 32 2.9
sp|P59448|CARB_BUCBP Carbamoyl-phosphate synthase large cha... 32 2.9
sp|Q7VRG4|SPEB_BLOFL Agmatinase (Agmatine ureohydrolase) (AUH) 31 3.8
sp|P08934|KNG1_RAT Kininogen-1 precursor [Contains: Kininog... 31 4.9
sp|P04588|POL_HV1MA Gag-Pol polyprotein (Pr160Gag-Pol) [Con... 31 4.9
sp|Q9WUD2|TRPV2_RAT Transient receptor potential cation cha... 31 4.9
sp|Q9ET80|JPH1_MOUSE Junctophilin-1 (Junctophilin type 1) (... 30 8.4
>sp|P32849|RAD5_YEAST DNA repair protein RAD5
Length = 1169
Score = 36.2 bits (82), Expect = 0.12
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Frame = +1
Query: 274 HVVVSRGVQCSEAIIKKLVENDIDSAENNNLFRSHTTERGDIFN------EHNISKEE-- 429
H++ R V C +I END D ++NN L T E + +++ SKEE
Sbjct: 834 HILRLRQVCCHPGLIGSQDENDEDLSKNNKLVTEQTVELDSLMRVVSERFDNSFSKEELD 893
Query: 430 -------IKSPDNQSIVPLKANV 477
+K PDN+S L+ ++
Sbjct: 894 AMIQRLKVKYPDNKSFQSLECSI 916
>sp|O13718|YDZB_SCHPO Hypothetical protein C14C4.11 in chromosome I
Length = 734
Score = 32.3 bits (72), Expect = 1.7
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Frame = +1
Query: 394 DIFNEHNISKEEIKSPDNQSIVPLKANVNPCRNGGIFKRKPEIFTPVTQEPPELRESSKF 573
+IF+ +N ++ + +P N V K N N +++R+ F P + E +
Sbjct: 163 EIFSLYNTLRDGLSAPSNSVQVKPKHEHNVDYNSSMYRRRTFRF---WVHPDNVMEVKTY 219
Query: 574 FRKHFPLDYKRHRKYFEDDIDSLSATI-----------SNYSLHEKLLRLEE 696
+H P+ Y ++ F+ D + +S + SN+ L+ + L E
Sbjct: 220 IMRHLPVLYYSGKQGFDKDQNGVSGILDPISTCLYLDNSNFDLYSQNLERSE 271
>sp|Q03104|MSC1_YEAST Meiotic sister chromatid recombination protein 1
Length = 513
Score = 31.6 bits (70), Expect = 2.9
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 103 TSATNFDDYSDSVDLLTNLHLFNVPVERPSEENNVVNALMGNAQCCF--KRYPGYQAHRH 276
T + F +S DLL L F VPV++ S +++++N N Q F + P Y+ + H
Sbjct: 442 TWSNTFQSWSQE-DLLQYLKSFGVPVKQTSTKDDLINLAKQNTQWLFGTVKEPAYKRYLH 500
Query: 277 VV 282
V
Sbjct: 501 NV 502
>sp|P59448|CARB_BUCBP Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1076
Score = 31.6 bits (70), Expect = 2.9
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 607 HRKYFEDD--IDSLSATISNYSLHEKLLRLEENVGFHQIFETVDQNNHKFENNTNMMPSF 780
H KYF+ D A +SN S +K+ + N+ H +++ +D + +F N+T M S
Sbjct: 488 HFKYFKKKGFSDLRIAQLSNNS-EKKIRSIRYNLKLHPVYKRIDTCSAEFANDTAYMYST 546
Query: 781 QQKDCD 798
+ +C+
Sbjct: 547 WEDECE 552
>sp|Q7VRG4|SPEB_BLOFL Agmatinase (Agmatine ureohydrolase) (AUH)
Length = 303
Score = 31.2 bits (69), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 547 PELRESSKFFRKHFPLDYKRHRKYFEDDIDSLSATISNYSLHEKLLRLEENV 702
P LR SKFF + + H Y++++ + Y+LHEKL+ +V
Sbjct: 131 PVLRAYSKFFGTISIIHFDAHADYYDNNNQYDHGAVILYALHEKLINPNRSV 182
>sp|P08934|KNG1_RAT Kininogen-1 precursor [Contains: Kininogen-1 heavy chain;
Bradykinin; Kininogen-1 light chain]
Length = 639
Score = 30.8 bits (68), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 751 ENNTNMMPSFQQKDCDFKSSTEAIKGSMTKSL 846
E N ++ F +DCDFK + EA G T +L
Sbjct: 80 EGNCSVQSGFAWQDCDFKDAEEAATGECTATL 111
>sp|P04588|POL_HV1MA Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein p17
(MA); Capsid protein p24 (CA); p2 spacer peptide;
Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
pol); Protease (Retropepsin) (PR); Reverse
transcriptase/ribonuclease H (p66 RT); p51 RT; p15;
Integrase (IN)]
Length = 1440
Score = 30.8 bits (68), Expect = 4.9
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 175 PVERPSEENNVVN---ALMGNAQCCFKRYPGYQAHRHVVVSRGVQCSEAIIKKLVENDID 345
P++ P +E+ VN L+G + YPG + + + RG + I+ E +++
Sbjct: 835 PIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVPLTAEAELE 894
Query: 346 SAENNNLFR 372
AEN + +
Sbjct: 895 LAENREILK 903
>sp|Q9WUD2|TRPV2_RAT Transient receptor potential cation channel subfamily V member 2
(TrpV2) (osm-9-like TRP channel 2) (OTRPC2) (Vanilloid
receptor-like protein 1) (VRL-1) (Stretch-activated
channel 2B)
Length = 761
Score = 30.8 bits (68), Expect = 4.9
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 217 LMGNAQCCFKRYPGYQAHRHVVVSRGVQCSEAIIKKLVENDID 345
L+ NAQC + Y G+ A + R +QC +K LVEN D
Sbjct: 151 LLVNAQCTDEFYQGHSALHIAIEKRSLQC----VKLLVENGAD 189
>sp|Q9ET80|JPH1_MOUSE Junctophilin-1 (Junctophilin type 1) (JP-1)
Length = 660
Score = 30.0 bits (66), Expect = 8.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 484 CRNGGIFKRKPEIFTPVTQEPPELRESSKFFRK 582
C+ GG K PE V ++PP +ES F+RK
Sbjct: 428 CQEGGDIKENPE--EKVLEKPPSPKESPHFYRK 458
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,502,835
Number of Sequences: 369166
Number of extensions: 1569299
Number of successful extensions: 4635
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4631
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)