Planaria EST Database


DrC_02755

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02755
         (676 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P68037|UB2L3_MOUSE  Ubiquitin-conjugating enzyme E2 L3 (U...   192   7e-49
sp|P52487|UBC84_DROME  Ubiquitin-conjugating enzyme E2-18 kD...   169   6e-42
sp|O14933|UB2L6_HUMAN  Ubiquitin-conjugating enzyme E2 L6 (U...   140   3e-33
sp|Q9QZU9|UB2L6_MOUSE  Ubiquitin-conjugating enzyme E2 L6 (U...   122   1e-27
sp|P70711|UB2D4_RAT  Ubiquitin-conjugating enzyme E2 D4 (Ubi...    92   1e-18
sp|P61080|UB2D1_MOUSE  Ubiquitin-conjugating enzyme E2 D1 (U...    91   3e-18
sp|Q9NPD8|UBE2T_HUMAN  Ubiquitin-conjugating enzyme E2 T (Ub...    88   2e-17
sp|P35132|UBC9_ARATH  Ubiquitin-conjugating enzyme E2-17 kDa...    87   5e-17
sp|P35129|UBC2_CAEEL  Ubiquitin-conjugating enzyme E2 2 (Ubi...    86   7e-17
sp|P52490|UBC13_YEAST  Ubiquitin-conjugating enzyme E2 13 (U...    86   7e-17
>sp|P68037|UB2L3_MOUSE Ubiquitin-conjugating enzyme E2 L3 (Ubiquitin-protein ligase L3)
           (Ubiquitin carrier protein L3) (UbcM4)
 sp|P68036|UB2L3_HUMAN Ubiquitin-conjugating enzyme E2 L3 (Ubiquitin-protein ligase L3)
           (Ubiquitin carrier protein L3) (UbcH7) (E2-F1) (L-UBC)
          Length = 154

 Score =  192 bits (488), Expect = 7e-49
 Identities = 83/140 (59%), Positives = 112/140 (80%), Gaps = 4/140 (2%)
 Frame = +2

Query: 38  EVQKC----FKEIQVDDKNILVWQGLIVPENPPYNKGAFRVQIDFPVEYPFXXXXXXXXX 205
           E++KC    F+ IQVD+ N+L WQGLIVP+NPPY+KGAFR++I+FP EYPF         
Sbjct: 13  EIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKT 72

Query: 206 XXYHPNVDEKGQICMPIITPENWKPATKIEQVIQNLVAMIHDPDADHFLRADIAEEFTKN 385
             YHPN+DEKGQ+C+P+I+ ENWKPATK +QVIQ+L+A+++DP  +H LRAD+AEE++K+
Sbjct: 73  KIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKD 132

Query: 386 KQTFMKNAEDHTKKYAEKRP 445
           ++ F KNAE+ TKKY EKRP
Sbjct: 133 RKKFCKNAEEFTKKYGEKRP 152
>sp|P52487|UBC84_DROME Ubiquitin-conjugating enzyme E2-18 kDa (Ubiquitin-protein ligase)
           (Ubiquitin carrier protein)
          Length = 153

 Score =  169 bits (428), Expect = 6e-42
 Identities = 75/149 (50%), Positives = 107/149 (71%)
 Frame = +2

Query: 2   IQKELSDIQNKPEVQKCFKEIQVDDKNILVWQGLIVPENPPYNKGAFRVQIDFPVEYPFX 181
           + +ELSD+          + I+  D+++L+W GL+VPE  PYNKGAFR++I+FP +YPF 
Sbjct: 7   LTRELSDLVEAK--MSTLRNIESSDESLLMWTGLLVPEKAPYNKGAFRIEINFPPQYPFM 64

Query: 182 XXXXXXXXXXYHPNVDEKGQICMPIITPENWKPATKIEQVIQNLVAMIHDPDADHFLRAD 361
                     YHPNVDEKG++C+PII+ +NWKP T+ EQV+Q LVA++H+P+ +H LR+D
Sbjct: 65  PPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSD 124

Query: 362 IAEEFTKNKQTFMKNAEDHTKKYAEKRPQ 448
           +AEEF +  + FMK AE+ TKK AEKRP+
Sbjct: 125 LAEEFVREHKKFMKTAEEFTKKNAEKRPE 153
>sp|O14933|UB2L6_HUMAN Ubiquitin-conjugating enzyme E2 L6 (Ubiquitin-protein ligase L6)
           (Ubiquitin carrier protein L6) (UbcH8) (Retinoic
           acid-induced gene B protein) (RIG-B)
          Length = 152

 Score =  140 bits (353), Expect = 3e-33
 Identities = 66/148 (44%), Positives = 92/148 (62%)
 Frame = +2

Query: 2   IQKELSDIQNKPEVQKCFKEIQVDDKNILVWQGLIVPENPPYNKGAFRVQIDFPVEYPFX 181
           + KEL D+Q KP      + +  DD N+LVW  L++P+ PPY+  AF ++I FP EYPF 
Sbjct: 6   VVKELEDLQKKPPPY--LRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFK 63

Query: 182 XXXXXXXXXXYHPNVDEKGQICMPIITPENWKPATKIEQVIQNLVAMIHDPDADHFLRAD 361
                     YHPNVDE GQIC+PII+ ENWKP TK  QV++ L  +++ P+    LR D
Sbjct: 64  PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 123

Query: 362 IAEEFTKNKQTFMKNAEDHTKKYAEKRP 445
           +A+  T+N + F KNAE+ T ++   RP
Sbjct: 124 LADLLTQNPELFRKNAEEFTLRFGVDRP 151
>sp|Q9QZU9|UB2L6_MOUSE Ubiquitin-conjugating enzyme E2 L6 (Ubiquitin-protein ligase L6)
           (Ubiquitin carrier protein L6) (UbcM8)
          Length = 152

 Score =  122 bits (305), Expect = 1e-27
 Identities = 58/148 (39%), Positives = 88/148 (59%)
 Frame = +2

Query: 2   IQKELSDIQNKPEVQKCFKEIQVDDKNILVWQGLIVPENPPYNKGAFRVQIDFPVEYPFX 181
           + KEL  +    E+    +++  DD N+LVW  L++P+  PY   AF+V+IDFP EYPF 
Sbjct: 6   VAKELESLSK--ELPPYLRQLSSDDANVLVWHMLLLPDQLPYGLKAFQVRIDFpreYPFK 63

Query: 182 XXXXXXXXXXYHPNVDEKGQICMPIITPENWKPATKIEQVIQNLVAMIHDPDADHFLRAD 361
                     YHPNV E G +C+P+I+ ENWKP TK  QV++ L  ++  P+ +  +R +
Sbjct: 64  PPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLE 123

Query: 362 IAEEFTKNKQTFMKNAEDHTKKYAEKRP 445
           +A+  T+N + F K AE+ T K+   RP
Sbjct: 124 LADLLTQNPEMFRKKAEEFTLKFGVDRP 151
>sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubiquitin-protein ligase D4)
           (Ubiquitin carrier protein D4) (Ubiquitin-conjugating
           enzyme E2-17 kDa 4) (E2(17)KB 4)
          Length = 147

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
 Frame = +2

Query: 2   IQKELSDIQNKPEVQKCFKEIQVDDKNILVWQGLIV-PENPPYNKGAFRVQIDFPVEYPF 178
           I KEL+D+   P  Q     +  D   +  WQ  I+ P + PY  GAF + IDFP EYPF
Sbjct: 6   IHKELNDLAQDPPAQCSAGPVGED---MFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPF 62

Query: 179 XXXXXXXXXXXYHPNVDEKGQICMPIITPENWKPATKIEQVIQNLVAMIHDPDADHFLRA 358
                      YHPNV+  G IC+ I+  + W PA  I +V+ ++ +++ DP+ D  L  
Sbjct: 63  KPPKVEFTTRIYHPNVNSNGSICLDILRSQ-WSPALTISKVLLSISSLLCDPNPDDPLVP 121

Query: 359 DIAEEFTKNKQTFMKNAEDHTKKYA 433
           +IA+ +  ++  + + A + T+KYA
Sbjct: 122 EIAQIYKTDRDKYNRTAREWTQKYA 146
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
           (Ubiquitin carrier protein D1) (Ubiquitin-conjugating
           enzyme E2-17 kDa 1) (E2(17)KB 1)
 sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
           (Ubiquitin carrier protein D1) (UbcH5)
           (Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
          Length = 147

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
 Frame = +2

Query: 2   IQKELSDIQNKPEVQKCFKEIQVDDKNILVWQGLIV-PENPPYNKGAFRVQIDFPVEYPF 178
           IQKELSD+Q  P    C      DD  +  WQ  I+ P +  Y  G F + + FP +YPF
Sbjct: 6   IQKELSDLQRDPPAH-CSAGPVGDD--LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 62

Query: 179 XXXXXXXXXXXYHPNVDEKGQICMPIITPENWKPATKIEQVIQNLVAMIHDPDADHFLRA 358
                      YHPN++  G IC+ I+  + W PA  + +V+ ++ +++ DP+ D  L  
Sbjct: 63  KPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPLVP 121

Query: 359 DIAEEFTKNKQTFMKNAEDHTKKYA 433
           DIA+ +  +K+ + ++A + T+KYA
Sbjct: 122 DIAQIYKSDKEKYNRHAREWTQKYA 146
>sp|Q9NPD8|UBE2T_HUMAN Ubiquitin-conjugating enzyme E2 T (Ubiquitin-protein ligase T)
           (Ubiquitin carrier protein T)
          Length = 197

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
 Frame = +2

Query: 65  QVDDKNILVWQGLIVPENPPYNKGAFRVQIDFPVEYPFXXXXXXXXXXXYHPNVDEKGQI 244
           Q+DD    +  G     N PY KG F++++  P  YPF           YHPN+D  G+I
Sbjct: 30  QMDDLRAQILGGA----NTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRI 85

Query: 245 CMPI--ITPEN-WKPATKIEQVIQNLVAMIHDPDADHFLRADIAEEFTKNKQTFMKNAED 415
           C+ +  + P+  W+P+  I  V+ ++  ++ +P+ D  L ADI+ EF  NK  F+KNA  
Sbjct: 86  CLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQ 145

Query: 416 HTKKYAEKR 442
            T+K+A ++
Sbjct: 146 WTEKHARQK 154
>sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 9 (Ubiquitin-protein ligase
           9) (Ubiquitin carrier protein 9) (UBCAT4B)
          Length = 148

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
 Frame = +2

Query: 2   IQKELSDIQNKPEVQKCFKEIQVDDKNILVWQGLIV-PENPPYNKGAFRVQIDFPVEYPF 178
           I KEL D+Q  P        +  D   +  WQ  I+ P + PY+ G F V I FP +YPF
Sbjct: 6   ILKELKDLQKDPPTSCSAGPVAED---MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPF 62

Query: 179 XXXXXXXXXXXYHPNVDEKGQICMPIITPENWKPATKIEQVIQNLVAMIHDPDADHFLRA 358
                      +HPN++  G IC+ I+  E W PA  I +V+ ++ +++ DP+ D  L  
Sbjct: 63  KPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121

Query: 359 DIAEEFTKNKQTFMKNAEDHTKKYA 433
           +IA  +  +K  +   A   T+KYA
Sbjct: 122 EIAHMYKTDKNKYESTARTWTQKYA 146
>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubiquitin-protein ligase 2)
           (Ubiquitin carrier protein 2)
          Length = 147

 Score = 86.3 bits (212), Expect = 7e-17
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 1/145 (0%)
 Frame = +2

Query: 2   IQKELSDIQNKPEVQKCFKEIQVDDKNILVWQGLIV-PENPPYNKGAFRVQIDFPVEYPF 178
           IQKEL D+   P  Q C      DD  +  WQ  I+ P   PY  G F + I FP +YPF
Sbjct: 6   IQKELQDLGRDPPAQ-CSAGPVGDD--LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 62

Query: 179 XXXXXXXXXXXYHPNVDEKGQICMPIITPENWKPATKIEQVIQNLVAMIHDPDADHFLRA 358
                      YHPN++  G IC+ I+  + W PA  I +V+ ++ +++ DP+ D  L  
Sbjct: 63  KPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPLVP 121

Query: 359 DIAEEFTKNKQTFMKNAEDHTKKYA 433
           +IA  +  +++ + + A + T+KYA
Sbjct: 122 EIARIYKTDRERYNQLAREWTQKYA 146
>sp|P52490|UBC13_YEAST Ubiquitin-conjugating enzyme E2 13 (Ubiquitin-protein ligase 13)
           (Ubiquitin carrier protein 13)
          Length = 153

 Score = 86.3 bits (212), Expect = 7e-17
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
 Frame = +2

Query: 74  DKNILVWQGLIV-PENPPYNKGAFRVQIDFPVEYPFXXXXXXXXXXXYHPNVDEKGQICM 250
           D N+  +Q  I  PE  PY  G F +++  P +YP            YHPN+D  G+IC+
Sbjct: 29  DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICL 88

Query: 251 PIITPENWKPATKIEQVIQNLVAMIHDPDADHFLRADIAEEFTKNKQTFMKNAEDHTKKY 430
            ++   NW PA +I  V+ ++ A++  P+ +  L  D+AE++ KN+Q     A + TK Y
Sbjct: 89  DVLKT-NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147

Query: 431 AEKRPQ 448
           A+K+P+
Sbjct: 148 AKKKPE 153
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,375,922
Number of Sequences: 369166
Number of extensions: 1414936
Number of successful extensions: 3763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3706
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)