Planaria EST Database


DrC_02743

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02743
         (284 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9R1X4|TIM_MOUSE  Timeless homolog (mTim)                       29   2.9  
sp|Q9Z2Y1|TIM_RAT  Timeless homolog (rTIM) (Timeless-like pr...    29   3.8  
sp|Q9UNS1|TIM_HUMAN  Timeless homolog (hTIM)                       29   3.8  
>sp|Q9R1X4|TIM_MOUSE Timeless homolog (mTim)
          Length = 1197

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 42  FLKSKKTAT--SALVSEVYREFWTQ*KNQNLTNVTRNYLTDRKFSFDEARQRRNKIDAHK 215
           F+   + AT    LVSE           QNLTN     LTDRK +   AR+    + A++
Sbjct: 385 FMAFNRAATFRPGLVSETLSIRTFHFVEQNLTNYYEMMLTDRKEAASWARRMHLALKAYQ 444

Query: 216 RLLMHLN 236
            LL  +N
Sbjct: 445 ELLATVN 451
>sp|Q9Z2Y1|TIM_RAT Timeless homolog (rTIM) (Timeless-like protein) (rTLP)
          Length = 1205

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 120 QNLTNVTRNYLTDRKFSFDEARQRRNKIDAHKRLLMHLN 236
           QNLTN     LTDRK +   AR+    + A++ LL  +N
Sbjct: 413 QNLTNYYEMMLTDRKEAASWARRMHLALKAYQELLATVN 451
>sp|Q9UNS1|TIM_HUMAN Timeless homolog (hTIM)
          Length = 1208

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 120 QNLTNVTRNYLTDRKFSFDEARQRRNKIDAHKRLLMHLN 236
           QNLTN     LTDRK +   AR+    + A++ LL  +N
Sbjct: 413 QNLTNYYEMMLTDRKEAASWARRMHLALKAYQELLATVN 451
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,538,103
Number of Sequences: 369166
Number of extensions: 420596
Number of successful extensions: 1396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)