Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_J09
(284 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R1X4|TIM_MOUSE Timeless homolog (mTim) 29 2.9
sp|Q9Z2Y1|TIM_RAT Timeless homolog (rTIM) (Timeless-like pr... 29 3.8
sp|Q9UNS1|TIM_HUMAN Timeless homolog (hTIM) 29 3.8
>sp|Q9R1X4|TIM_MOUSE Timeless homolog (mTim)
Length = 1197
Score = 29.3 bits (64), Expect = 2.9
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 42 FLKSKKTAT--SALVSEVYREFWTQ*KNQNLTNVTRNYLTDRKFSFDEARQRRNKIDAHK 215
F+ + AT LVSE QNLTN LTDRK + AR+ + A++
Sbjct: 385 FMAFNRAATFRPGLVSETLSIRTFHFVEQNLTNYYEMMLTDRKEAASWARRMHLALKAYQ 444
Query: 216 RLLMHLN 236
LL +N
Sbjct: 445 ELLATVN 451
>sp|Q9Z2Y1|TIM_RAT Timeless homolog (rTIM) (Timeless-like protein) (rTLP)
Length = 1205
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 120 QNLTNVTRNYLTDRKFSFDEARQRRNKIDAHKRLLMHLN 236
QNLTN LTDRK + AR+ + A++ LL +N
Sbjct: 413 QNLTNYYEMMLTDRKEAASWARRMHLALKAYQELLATVN 451
>sp|Q9UNS1|TIM_HUMAN Timeless homolog (hTIM)
Length = 1208
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 120 QNLTNVTRNYLTDRKFSFDEARQRRNKIDAHKRLLMHLN 236
QNLTN LTDRK + AR+ + A++ LL +N
Sbjct: 413 QNLTNYYEMMLTDRKEAASWARRMHLALKAYQELLATVN 451
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,538,103
Number of Sequences: 369166
Number of extensions: 420596
Number of successful extensions: 1396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)