Planaria EST Database


DrC_02742

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02742
         (756 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9WUA2|SYFB_MOUSE  Phenylalanyl-tRNA synthetase beta chai...   199   7e-51
sp|Q9NSD9|SYFB_HUMAN  Phenylalanyl-tRNA synthetase beta chai...   190   4e-48
sp|Q9VCA5|SYFB_DROME  Probable phenylalanyl-tRNA synthetase ...   184   3e-46
sp|Q19713|SYFB_CAEEL  Phenylalanyl-tRNA synthetase beta chai...   176   5e-44
sp|Q9SGE9|SYFB_ARATH  Probable phenylalanyl-tRNA synthetase ...   144   2e-34
sp|O13432|SYFB_CANAL  Phenylalanyl-tRNA synthetase beta chai...   135   2e-31
sp|P15624|SYFB_YEAST  Phenylalanyl-tRNA synthetase beta chai...   129   8e-30
sp|O42849|SYFB_SCHPO  Phenylalanyl-tRNA synthetase beta chai...   126   6e-29
sp|P95960|SYFB_SULSO  Phenylalanyl-tRNA synthetase beta chai...   108   2e-23
sp|Q971D8|SYFB_SULTO  Phenylalanyl-tRNA synthetase beta chai...    99   9e-21
>sp|Q9WUA2|SYFB_MOUSE Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
            beta chain) (PheRS)
          Length = 589

 Score =  199 bits (506), Expect = 7e-51
 Identities = 106/250 (42%), Positives = 155/250 (62%)
 Frame = +1

Query: 4    LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
            + V +PPTR D+IH  DIVED AI +GY+NI MT  +  T + +  L++LT  +R+ + +
Sbjct: 347  IEVEIPPTRADVIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRLDMAA 406

Query: 184  EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
              +TEAL+F LCS++D++  LG +I+   AVHISNPKT EFQV RTTL+ GLL TI++N+
Sbjct: 407  AGFTEALTFALCSQEDIADKLGLDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR 466

Query: 364  HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYAY 543
             + LPLK+FE+ D+V+ D+ KDV A N R  CA+YY   P F+ ++  +  +M       
Sbjct: 467  KMPLPLKLFEISDVVVKDSGKDVGAKNYRHLCAVYYSKTPGFEIIHGLLDRIMQLLDVPP 526

Query: 544  KDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIKKGIAS 723
             + S       Y           PGR  +I +   Q IGK+G++ PD++  F +    +S
Sbjct: 527  GEESG-----GYMIKASAGSAFFPGRCAEIFVG-GQSIGKLGVLHPDVITKFELTMPCSS 580

Query: 724  LFEIDIEPFL 753
            L EI+IEPFL
Sbjct: 581  L-EINIEPFL 589
>sp|Q9NSD9|SYFB_HUMAN Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
            beta chain) (PheRS)
          Length = 589

 Score =  190 bits (482), Expect = 4e-48
 Identities = 104/250 (41%), Positives = 152/250 (60%)
 Frame = +1

Query: 4    LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
            + + +PPTR DIIH  DIVED AI +GY+NI MT  +  T + +  L++LT  +R  + +
Sbjct: 347  IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAA 406

Query: 184  EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
              +TEAL+F LCS++D++  LG +I+   AVHISNPKT EFQV RTTL+ GLL TI++N+
Sbjct: 407  AGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR 466

Query: 364  HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYAY 543
             + LPLK+FE+ DIV+ D++ DV A N R  CA+YY   P F+ ++  +  +M       
Sbjct: 467  KMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQ-----L 521

Query: 544  KDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIKKGIAS 723
             D      +  Y           PGR  +I     Q +GK+G++ PD++  F +    +S
Sbjct: 522  LDVPPGEDKGGYVIKASEGPAFFPGRCAEIFAR-GQSVGKLGVLHPDVITKFELTMPCSS 580

Query: 724  LFEIDIEPFL 753
            L EI+I PFL
Sbjct: 581  L-EINIGPFL 589
>sp|Q9VCA5|SYFB_DROME Probable phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA
            ligase beta chain) (PheRS)
          Length = 589

 Score =  184 bits (466), Expect = 3e-46
 Identities = 104/250 (41%), Positives = 146/250 (58%)
 Frame = +1

Query: 4    LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
            L V +PPTRHD+IH  DI EDVAI +GY+NI  +       + +  L++LT ++R  +  
Sbjct: 345  LVVKIPPTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPLNKLTEQLREQVAQ 404

Query: 184  EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
              +TEAL+F LCSRDD+ + L K I+ +PAVHI NPKT EFQVVRTTL+ GLL T+ +N+
Sbjct: 405  AGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRTTLLPGLLKTLVANR 464

Query: 364  HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYAY 543
             + LPLK+FE+ D+V+ D S +V A N RR CA+       F+ V+  +  +M      +
Sbjct: 465  KMPLPLKLFEISDVVVADESTEVGARNERRVCAVNCNKTAGFEVVHGLLDRVMQLLSVPW 524

Query: 544  KDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIKKGIAS 723
            K  S +     Y           PGR    V+ D   IGKIG++ P +L+ F +     S
Sbjct: 525  KSASGTK---GYYLQATEDPSYFPGRCAN-VMYDGVVIGKIGVLHPTVLQAFELTTP-CS 579

Query: 724  LFEIDIEPFL 753
              E  IEPF+
Sbjct: 580  AVEFTIEPFV 589
>sp|Q19713|SYFB_CAEEL Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
            beta chain) (PheRS)
          Length = 591

 Score =  176 bits (447), Expect = 5e-44
 Identities = 101/259 (38%), Positives = 149/259 (57%), Gaps = 9/259 (3%)
 Frame = +1

Query: 4    LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
            L + VPPTRHDI+H  DI EDV + FGY+N+     E  T +    +++L   +RI + +
Sbjct: 348  LKIVVPPTRHDILHACDIAEDVGVAFGYNNLITKLPESNTVAVAFPINKLCDNLRIEIAA 407

Query: 184  EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
              +TEAL+F LCSRDD+S  L +      AVHI NPKT EFQV RT+L+ GLL T+SSN+
Sbjct: 408  AGWTEALNFALCSRDDISSKLRQPDALSHAVHIGNPKTLEFQVARTSLLPGLLKTLSSNR 467

Query: 364  HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLM------- 522
             + LPLK+FE+QD+++ D++ DV A N RR  A+YY     F+ +   +  +M       
Sbjct: 468  DMPLPLKLFELQDVIVKDSNTDVGARNERRLAAVYYNRAAGFEIIQGFLDRIMRMLNVNP 527

Query: 523  --NGFGYAYKDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKN 696
              +G GY  +   NS+                PGR  KI+      +G IG + P+++ +
Sbjct: 528  ARDGTGYYIEADENST--------------YFPGRCAKIIGPKGVVLGHIGALHPEVITS 573

Query: 697  FGIKKGIASLFEIDIEPFL 753
            FG+     ++ EI++EPFL
Sbjct: 574  FGLTLPCGAV-EINVEPFL 591
>sp|Q9SGE9|SYFB_ARATH Probable phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA
            ligase beta chain) (PheRS)
          Length = 598

 Score =  144 bits (364), Expect = 2e-34
 Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 6/256 (2%)
 Frame = +1

Query: 4    LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGET-SLSRLTREVRILLM 180
            + V+VPP+R D++HP D++EDVAI +G++NI      RK  S +  +L+ LT  +RI + 
Sbjct: 351  IKVHVPPSRSDVLHPCDVMEDVAIAYGFNNIPT----RKPASIKPLTLNELTDLLRIEIA 406

Query: 181  SEHYTEALSFCLCSRDDVSKSLGKEINDV-PAVHISNPKTPEFQVVRTTLVAGLLHTISS 357
               YTE +++ LCS  +    L +E  DV  AV + NP++ +F+ +R  L+ GLL T+  
Sbjct: 407  MCVYTEVVTWLLCSHKENFAMLNRE--DVNSAVIVGNPRSADFEAMRRALMPGLLKTVGH 464

Query: 358  NQHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGY 537
            N     P+K+FE+ D+VMLD SKDV A N R   A+Y G    F+ ++  +  +M     
Sbjct: 465  NNKYPKPIKIFEISDVVMLDESKDVGASNRRHLAALYCGATSGFELIHGLVDRIMEVMAI 524

Query: 538  AYKDPSNSSLQMS----YXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGI 705
             +     +++ ++    Y          LPGR   I++   + IG  GIV P++L NF I
Sbjct: 525  PFLTIHENNVPINEKDGYYVKLSQEPEFLPGRQASIIVR-GKHIGNFGIVHPEVLNNFDI 583

Query: 706  KKGIASLFEIDIEPFL 753
                 S  E+DIE  L
Sbjct: 584  PDP-CSYLELDIEAIL 598
>sp|O13432|SYFB_CANAL Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
            beta chain) (PheRS)
          Length = 592

 Score =  135 bits (339), Expect = 2e-31
 Identities = 89/258 (34%), Positives = 136/258 (52%), Gaps = 7/258 (2%)
 Frame = +1

Query: 1    MLSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKT-ESGETSLSRLTREVRILL 177
            +L V +P TR DI+H  DI+EDVAIG+GYDN+  T+ + ++  +    ++++   +R+  
Sbjct: 336  ILDVKIPITRSDILHQCDIMEDVAIGYGYDNLKKTKPQAESLVAAPLPVNKVADILRLAS 395

Query: 178  MSEHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISS 357
                Y E +   L S D+    L ++ +   AV + NPKT E+QVVRTTL+ G+L T+  
Sbjct: 396  SQAGYLEVMPLTLSSHDENFAWLKQKDDGTKAVKLENPKTIEYQVVRTTLLPGILKTVKE 455

Query: 358  NQHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGY 537
            N+   LP+KVFE  DIV+ +   +  A N R   A+Y G    F+ V   +  +M     
Sbjct: 456  NRKHSLPIKVFECGDIVLKNPELERGAFNQRNWAALYVGKTSGFEMVQGLLGKIMQTMRT 515

Query: 538  AY-KDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVIN--DNQE---IGKIGIVKPDILKNF 699
             + ++PS    +  +           PGR  KI     DN E   IG IG++ P+++ NF
Sbjct: 516  PWLENPSKDQRRGYWIEEDKENTTFFPGRGAKIYFRNADNAEAKAIGSIGVLHPEVMNNF 575

Query: 700  GIKKGIASLFEIDIEPFL 753
             I    AS  EI+ E FL
Sbjct: 576  DIPYA-ASSVEINAEVFL 592
>sp|P15624|SYFB_YEAST Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
            beta chain) (PheRS)
          Length = 595

 Score =  129 bits (324), Expect = 8e-30
 Identities = 82/260 (31%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
 Frame = +1

Query: 1    MLSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTE--SGETSLSRLTREVRIL 174
            +L V++P TR DI+H  DI+ED A+G+G++N+   E        +    +++++   R+ 
Sbjct: 337  ILHVDIPVTRPDILHACDIMEDAAVGYGFNNLPKGEKLSNANFIAKPLPINKVSDIFRVA 396

Query: 175  LMSEHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTIS 354
                 + E L   LCS D+  K L +  N   AV ++NPKT E+QVVRTTL+ G+L T+ 
Sbjct: 397  SSQATWVEVLPLTLCSHDENFKFLRQSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVK 456

Query: 355  SNQHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFG 534
             N+   LP+KVFE  D+V  D+  + +A N R   AIY G    F+ +   +  +M  F 
Sbjct: 457  ENRKHSLPIKVFETGDVVFKDDKLERKAYNERHWAAIYVGKNSGFEIIQGLLGKIMQTFR 516

Query: 535  YAY-KDPSNSSLQMSY-XXXXXXXXXXLPGRSYKIVINDNQ-----EIGKIGIVKPDILK 693
              +  D   ++    Y            PGR  K++    +     +IG +G++ P+++ 
Sbjct: 517  TEWIADYGAAASGRGYWIEEDDSVKTYFPGRGAKVMFRSKEGAEPKQIGHLGVLHPEVMM 576

Query: 694  NFGIKKGIASLFEIDIEPFL 753
            NF +    AS  E++ E FL
Sbjct: 577  NFDVPFA-ASFVEVNAEVFL 595
>sp|O42849|SYFB_SCHPO Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
            beta chain) (PheRS)
          Length = 589

 Score =  126 bits (317), Expect = 6e-29
 Identities = 82/252 (32%), Positives = 127/252 (50%), Gaps = 6/252 (2%)
 Frame = +1

Query: 4    LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGET-SLSRLTREVRILLM 180
            L V VPP R DI+H  DI+ED+ I +GYDN+  T        G+   ++RL   +R  + 
Sbjct: 336  LLVYVPPLRADILHQCDIMEDLGIAYGYDNLKHTYPAHSVTFGKPFEVNRLADIIRNEVA 395

Query: 181  SEHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSN 360
               ++E + F LCS D+    L K  +D  AV ++NPKT EFQVVR++L+ G+L T+  N
Sbjct: 396  YAGWSEVMPFILCSHDENYAWLRKT-DDSKAVQLANPKTLEFQVVRSSLLPGILKTVREN 454

Query: 361  QHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYA 540
            ++  LP+K+FEV D+   D S++    N R  CAI+ GL   F+ ++  +  +M      
Sbjct: 455  KNHALPIKIFEVSDVAFCDYSRERMTRNERHLCAIFAGLNSGFEQIHGLLDRVMLMLNTK 514

Query: 541  YKDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDN-----QEIGKIGIVKPDILKNFGI 705
                   S  + Y           PGR   +    +       +G  G++ P +L+ F +
Sbjct: 515  RIMNPKDSDAVGYWIEAEDDSTFFPGRCAAVYYRKDFGTAGIRVGVFGVLHPLVLEKFEL 574

Query: 706  KKGIASLFEIDI 741
                AS  EID+
Sbjct: 575  TSA-ASAVEIDL 585
>sp|P95960|SYFB_SULSO Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
           beta chain) (PheRS)
          Length = 544

 Score =  108 bits (270), Expect = 2e-23
 Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 2/238 (0%)
 Frame = +1

Query: 1   MLSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLM 180
           ++ V VP  R DII+ IDIVED+A+  GY+N+  ++Y          L+ L R++R L +
Sbjct: 310 IIRVTVPQYRVDIINEIDIVEDIAMSIGYNNLEPSKYISTNYGSYDYLTLLERKMRELSI 369

Query: 181 SEHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSN 360
              + E  +F L   +        +I D   V I NP + E+  VR +L+  LL  +S N
Sbjct: 370 GAGFVEVFNFVLIKNE--------KILDSKYVKILNPISEEYNAVRNSLIPILLDFLSKN 421

Query: 361 QHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYA 540
           QH + P+++FE  D+V+ D+S D    N +RA          ++ V   +  ++   G  
Sbjct: 422 QHAKFPIRIFETGDVVIYDSSTDTGFRNDKRAAYAIMDNKVSYEDVQAPIHYILKTLGIE 481

Query: 541 --YKDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIK 708
             YK+ +N                 + GRS  IV  +N++IG IG + PD+L  FGI+
Sbjct: 482 VNYKEENND--------------IFIEGRSASIVY-ENEKIGVIGEINPDVLIRFGIE 524
>sp|Q971D8|SYFB_SULTO Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
           beta chain) (PheRS)
          Length = 540

 Score = 99.4 bits (246), Expect = 9e-21
 Identities = 71/237 (29%), Positives = 117/237 (49%), Gaps = 2/237 (0%)
 Frame = +1

Query: 4   LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
           + V +PP R+DI+  IDI E+VAI +GY+N+  T Y+ +     +  ++L R +R L + 
Sbjct: 311 IEVIIPPYRNDILSQIDITEEVAITYGYNNLSPTPYKIEKIGSLSDRTKLIRVLRDLSVG 370

Query: 184 EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
             +TE  +F L S    S  LG        V I NP T ++  VR +L+  +L  +S NQ
Sbjct: 371 GGFTEIFTFTLISE---SLLLG------DFVKILNPITVDYNSVRNSLLPSILIFLSKNQ 421

Query: 364 HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGY-- 537
           H R+P++VFE+ D+V+ + + +    N   A          F+ +   +  ++N  G   
Sbjct: 422 HARMPIRVFEIGDVVIRNENTETGYSNKLNAAYAIMNSRVSFEELQAPLHEILNSLGINP 481

Query: 538 AYKDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIK 708
            YK  +N                 + GR+  I  N N++IG IG + P+IL+   I+
Sbjct: 482 IYKRDTN--------------PLFIEGRTASIYAN-NKKIGIIGEINPNILEKIDIE 523
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,776,779
Number of Sequences: 369166
Number of extensions: 1797328
Number of successful extensions: 4988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4908
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)