Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_J05
(756 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUA2|SYFB_MOUSE Phenylalanyl-tRNA synthetase beta chai... 199 7e-51
sp|Q9NSD9|SYFB_HUMAN Phenylalanyl-tRNA synthetase beta chai... 190 4e-48
sp|Q9VCA5|SYFB_DROME Probable phenylalanyl-tRNA synthetase ... 184 3e-46
sp|Q19713|SYFB_CAEEL Phenylalanyl-tRNA synthetase beta chai... 176 5e-44
sp|Q9SGE9|SYFB_ARATH Probable phenylalanyl-tRNA synthetase ... 144 2e-34
sp|O13432|SYFB_CANAL Phenylalanyl-tRNA synthetase beta chai... 135 2e-31
sp|P15624|SYFB_YEAST Phenylalanyl-tRNA synthetase beta chai... 129 8e-30
sp|O42849|SYFB_SCHPO Phenylalanyl-tRNA synthetase beta chai... 126 6e-29
sp|P95960|SYFB_SULSO Phenylalanyl-tRNA synthetase beta chai... 108 2e-23
sp|Q971D8|SYFB_SULTO Phenylalanyl-tRNA synthetase beta chai... 99 9e-21
>sp|Q9WUA2|SYFB_MOUSE Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 589
Score = 199 bits (506), Expect = 7e-51
Identities = 106/250 (42%), Positives = 155/250 (62%)
Frame = +1
Query: 4 LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
+ V +PPTR D+IH DIVED AI +GY+NI MT + T + + L++LT +R+ + +
Sbjct: 347 IEVEIPPTRADVIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRLDMAA 406
Query: 184 EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
+TEAL+F LCS++D++ LG +I+ AVHISNPKT EFQV RTTL+ GLL TI++N+
Sbjct: 407 AGFTEALTFALCSQEDIADKLGLDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR 466
Query: 364 HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYAY 543
+ LPLK+FE+ D+V+ D+ KDV A N R CA+YY P F+ ++ + +M
Sbjct: 467 KMPLPLKLFEISDVVVKDSGKDVGAKNYRHLCAVYYSKTPGFEIIHGLLDRIMQLLDVPP 526
Query: 544 KDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIKKGIAS 723
+ S Y PGR +I + Q IGK+G++ PD++ F + +S
Sbjct: 527 GEESG-----GYMIKASAGSAFFPGRCAEIFVG-GQSIGKLGVLHPDVITKFELTMPCSS 580
Query: 724 LFEIDIEPFL 753
L EI+IEPFL
Sbjct: 581 L-EINIEPFL 589
>sp|Q9NSD9|SYFB_HUMAN Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 589
Score = 190 bits (482), Expect = 4e-48
Identities = 104/250 (41%), Positives = 152/250 (60%)
Frame = +1
Query: 4 LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
+ + +PPTR DIIH DIVED AI +GY+NI MT + T + + L++LT +R + +
Sbjct: 347 IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAA 406
Query: 184 EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
+TEAL+F LCS++D++ LG +I+ AVHISNPKT EFQV RTTL+ GLL TI++N+
Sbjct: 407 AGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR 466
Query: 364 HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYAY 543
+ LPLK+FE+ DIV+ D++ DV A N R CA+YY P F+ ++ + +M
Sbjct: 467 KMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQ-----L 521
Query: 544 KDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIKKGIAS 723
D + Y PGR +I Q +GK+G++ PD++ F + +S
Sbjct: 522 LDVPPGEDKGGYVIKASEGPAFFPGRCAEIFAR-GQSVGKLGVLHPDVITKFELTMPCSS 580
Query: 724 LFEIDIEPFL 753
L EI+I PFL
Sbjct: 581 L-EINIGPFL 589
>sp|Q9VCA5|SYFB_DROME Probable phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA
ligase beta chain) (PheRS)
Length = 589
Score = 184 bits (466), Expect = 3e-46
Identities = 104/250 (41%), Positives = 146/250 (58%)
Frame = +1
Query: 4 LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
L V +PPTRHD+IH DI EDVAI +GY+NI + + + L++LT ++R +
Sbjct: 345 LVVKIPPTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPLNKLTEQLREQVAQ 404
Query: 184 EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
+TEAL+F LCSRDD+ + L K I+ +PAVHI NPKT EFQVVRTTL+ GLL T+ +N+
Sbjct: 405 AGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRTTLLPGLLKTLVANR 464
Query: 364 HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYAY 543
+ LPLK+FE+ D+V+ D S +V A N RR CA+ F+ V+ + +M +
Sbjct: 465 KMPLPLKLFEISDVVVADESTEVGARNERRVCAVNCNKTAGFEVVHGLLDRVMQLLSVPW 524
Query: 544 KDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIKKGIAS 723
K S + Y PGR V+ D IGKIG++ P +L+ F + S
Sbjct: 525 KSASGTK---GYYLQATEDPSYFPGRCAN-VMYDGVVIGKIGVLHPTVLQAFELTTP-CS 579
Query: 724 LFEIDIEPFL 753
E IEPF+
Sbjct: 580 AVEFTIEPFV 589
>sp|Q19713|SYFB_CAEEL Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 591
Score = 176 bits (447), Expect = 5e-44
Identities = 101/259 (38%), Positives = 149/259 (57%), Gaps = 9/259 (3%)
Frame = +1
Query: 4 LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
L + VPPTRHDI+H DI EDV + FGY+N+ E T + +++L +RI + +
Sbjct: 348 LKIVVPPTRHDILHACDIAEDVGVAFGYNNLITKLPESNTVAVAFPINKLCDNLRIEIAA 407
Query: 184 EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
+TEAL+F LCSRDD+S L + AVHI NPKT EFQV RT+L+ GLL T+SSN+
Sbjct: 408 AGWTEALNFALCSRDDISSKLRQPDALSHAVHIGNPKTLEFQVARTSLLPGLLKTLSSNR 467
Query: 364 HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLM------- 522
+ LPLK+FE+QD+++ D++ DV A N RR A+YY F+ + + +M
Sbjct: 468 DMPLPLKLFELQDVIVKDSNTDVGARNERRLAAVYYNRAAGFEIIQGFLDRIMRMLNVNP 527
Query: 523 --NGFGYAYKDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKN 696
+G GY + NS+ PGR KI+ +G IG + P+++ +
Sbjct: 528 ARDGTGYYIEADENST--------------YFPGRCAKIIGPKGVVLGHIGALHPEVITS 573
Query: 697 FGIKKGIASLFEIDIEPFL 753
FG+ ++ EI++EPFL
Sbjct: 574 FGLTLPCGAV-EINVEPFL 591
>sp|Q9SGE9|SYFB_ARATH Probable phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA
ligase beta chain) (PheRS)
Length = 598
Score = 144 bits (364), Expect = 2e-34
Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 6/256 (2%)
Frame = +1
Query: 4 LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGET-SLSRLTREVRILLM 180
+ V+VPP+R D++HP D++EDVAI +G++NI RK S + +L+ LT +RI +
Sbjct: 351 IKVHVPPSRSDVLHPCDVMEDVAIAYGFNNIPT----RKPASIKPLTLNELTDLLRIEIA 406
Query: 181 SEHYTEALSFCLCSRDDVSKSLGKEINDV-PAVHISNPKTPEFQVVRTTLVAGLLHTISS 357
YTE +++ LCS + L +E DV AV + NP++ +F+ +R L+ GLL T+
Sbjct: 407 MCVYTEVVTWLLCSHKENFAMLNRE--DVNSAVIVGNPRSADFEAMRRALMPGLLKTVGH 464
Query: 358 NQHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGY 537
N P+K+FE+ D+VMLD SKDV A N R A+Y G F+ ++ + +M
Sbjct: 465 NNKYPKPIKIFEISDVVMLDESKDVGASNRRHLAALYCGATSGFELIHGLVDRIMEVMAI 524
Query: 538 AYKDPSNSSLQMS----YXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGI 705
+ +++ ++ Y LPGR I++ + IG GIV P++L NF I
Sbjct: 525 PFLTIHENNVPINEKDGYYVKLSQEPEFLPGRQASIIVR-GKHIGNFGIVHPEVLNNFDI 583
Query: 706 KKGIASLFEIDIEPFL 753
S E+DIE L
Sbjct: 584 PDP-CSYLELDIEAIL 598
>sp|O13432|SYFB_CANAL Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 592
Score = 135 bits (339), Expect = 2e-31
Identities = 89/258 (34%), Positives = 136/258 (52%), Gaps = 7/258 (2%)
Frame = +1
Query: 1 MLSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKT-ESGETSLSRLTREVRILL 177
+L V +P TR DI+H DI+EDVAIG+GYDN+ T+ + ++ + ++++ +R+
Sbjct: 336 ILDVKIPITRSDILHQCDIMEDVAIGYGYDNLKKTKPQAESLVAAPLPVNKVADILRLAS 395
Query: 178 MSEHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISS 357
Y E + L S D+ L ++ + AV + NPKT E+QVVRTTL+ G+L T+
Sbjct: 396 SQAGYLEVMPLTLSSHDENFAWLKQKDDGTKAVKLENPKTIEYQVVRTTLLPGILKTVKE 455
Query: 358 NQHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGY 537
N+ LP+KVFE DIV+ + + A N R A+Y G F+ V + +M
Sbjct: 456 NRKHSLPIKVFECGDIVLKNPELERGAFNQRNWAALYVGKTSGFEMVQGLLGKIMQTMRT 515
Query: 538 AY-KDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVIN--DNQE---IGKIGIVKPDILKNF 699
+ ++PS + + PGR KI DN E IG IG++ P+++ NF
Sbjct: 516 PWLENPSKDQRRGYWIEEDKENTTFFPGRGAKIYFRNADNAEAKAIGSIGVLHPEVMNNF 575
Query: 700 GIKKGIASLFEIDIEPFL 753
I AS EI+ E FL
Sbjct: 576 DIPYA-ASSVEINAEVFL 592
>sp|P15624|SYFB_YEAST Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 595
Score = 129 bits (324), Expect = 8e-30
Identities = 82/260 (31%), Positives = 134/260 (51%), Gaps = 9/260 (3%)
Frame = +1
Query: 1 MLSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTE--SGETSLSRLTREVRIL 174
+L V++P TR DI+H DI+ED A+G+G++N+ E + +++++ R+
Sbjct: 337 ILHVDIPVTRPDILHACDIMEDAAVGYGFNNLPKGEKLSNANFIAKPLPINKVSDIFRVA 396
Query: 175 LMSEHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTIS 354
+ E L LCS D+ K L + N AV ++NPKT E+QVVRTTL+ G+L T+
Sbjct: 397 SSQATWVEVLPLTLCSHDENFKFLRQSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVK 456
Query: 355 SNQHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFG 534
N+ LP+KVFE D+V D+ + +A N R AIY G F+ + + +M F
Sbjct: 457 ENRKHSLPIKVFETGDVVFKDDKLERKAYNERHWAAIYVGKNSGFEIIQGLLGKIMQTFR 516
Query: 535 YAY-KDPSNSSLQMSY-XXXXXXXXXXLPGRSYKIVINDNQ-----EIGKIGIVKPDILK 693
+ D ++ Y PGR K++ + +IG +G++ P+++
Sbjct: 517 TEWIADYGAAASGRGYWIEEDDSVKTYFPGRGAKVMFRSKEGAEPKQIGHLGVLHPEVMM 576
Query: 694 NFGIKKGIASLFEIDIEPFL 753
NF + AS E++ E FL
Sbjct: 577 NFDVPFA-ASFVEVNAEVFL 595
>sp|O42849|SYFB_SCHPO Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 589
Score = 126 bits (317), Expect = 6e-29
Identities = 82/252 (32%), Positives = 127/252 (50%), Gaps = 6/252 (2%)
Frame = +1
Query: 4 LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGET-SLSRLTREVRILLM 180
L V VPP R DI+H DI+ED+ I +GYDN+ T G+ ++RL +R +
Sbjct: 336 LLVYVPPLRADILHQCDIMEDLGIAYGYDNLKHTYPAHSVTFGKPFEVNRLADIIRNEVA 395
Query: 181 SEHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSN 360
++E + F LCS D+ L K +D AV ++NPKT EFQVVR++L+ G+L T+ N
Sbjct: 396 YAGWSEVMPFILCSHDENYAWLRKT-DDSKAVQLANPKTLEFQVVRSSLLPGILKTVREN 454
Query: 361 QHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYA 540
++ LP+K+FEV D+ D S++ N R CAI+ GL F+ ++ + +M
Sbjct: 455 KNHALPIKIFEVSDVAFCDYSRERMTRNERHLCAIFAGLNSGFEQIHGLLDRVMLMLNTK 514
Query: 541 YKDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDN-----QEIGKIGIVKPDILKNFGI 705
S + Y PGR + + +G G++ P +L+ F +
Sbjct: 515 RIMNPKDSDAVGYWIEAEDDSTFFPGRCAAVYYRKDFGTAGIRVGVFGVLHPLVLEKFEL 574
Query: 706 KKGIASLFEIDI 741
AS EID+
Sbjct: 575 TSA-ASAVEIDL 585
>sp|P95960|SYFB_SULSO Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 544
Score = 108 bits (270), Expect = 2e-23
Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 2/238 (0%)
Frame = +1
Query: 1 MLSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLM 180
++ V VP R DII+ IDIVED+A+ GY+N+ ++Y L+ L R++R L +
Sbjct: 310 IIRVTVPQYRVDIINEIDIVEDIAMSIGYNNLEPSKYISTNYGSYDYLTLLERKMRELSI 369
Query: 181 SEHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSN 360
+ E +F L + +I D V I NP + E+ VR +L+ LL +S N
Sbjct: 370 GAGFVEVFNFVLIKNE--------KILDSKYVKILNPISEEYNAVRNSLIPILLDFLSKN 421
Query: 361 QHLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGYA 540
QH + P+++FE D+V+ D+S D N +RA ++ V + ++ G
Sbjct: 422 QHAKFPIRIFETGDVVIYDSSTDTGFRNDKRAAYAIMDNKVSYEDVQAPIHYILKTLGIE 481
Query: 541 --YKDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIK 708
YK+ +N + GRS IV +N++IG IG + PD+L FGI+
Sbjct: 482 VNYKEENND--------------IFIEGRSASIVY-ENEKIGVIGEINPDVLIRFGIE 524
>sp|Q971D8|SYFB_SULTO Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 540
Score = 99.4 bits (246), Expect = 9e-21
Identities = 71/237 (29%), Positives = 117/237 (49%), Gaps = 2/237 (0%)
Frame = +1
Query: 4 LSVNVPPTRHDIIHPIDIVEDVAIGFGYDNIGMTEYERKTESGETSLSRLTREVRILLMS 183
+ V +PP R+DI+ IDI E+VAI +GY+N+ T Y+ + + ++L R +R L +
Sbjct: 311 IEVIIPPYRNDILSQIDITEEVAITYGYNNLSPTPYKIEKIGSLSDRTKLIRVLRDLSVG 370
Query: 184 EHYTEALSFCLCSRDDVSKSLGKEINDVPAVHISNPKTPEFQVVRTTLVAGLLHTISSNQ 363
+TE +F L S S LG V I NP T ++ VR +L+ +L +S NQ
Sbjct: 371 GGFTEIFTFTLISE---SLLLG------DFVKILNPITVDYNSVRNSLLPSILIFLSKNQ 421
Query: 364 HLRLPLKVFEVQDIVMLDNSKDVRAGNVRRACAIYYGLLPDFDYVYNSMTTLMNGFGY-- 537
H R+P++VFE+ D+V+ + + + N A F+ + + ++N G
Sbjct: 422 HARMPIRVFEIGDVVIRNENTETGYSNKLNAAYAIMNSRVSFEELQAPLHEILNSLGINP 481
Query: 538 AYKDPSNSSLQMSYXXXXXXXXXXLPGRSYKIVINDNQEIGKIGIVKPDILKNFGIK 708
YK +N + GR+ I N N++IG IG + P+IL+ I+
Sbjct: 482 IYKRDTN--------------PLFIEGRTASIYAN-NKKIGIIGEINPNILEKIDIE 523
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,776,779
Number of Sequences: 369166
Number of extensions: 1797328
Number of successful extensions: 4988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4908
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)