Planaria EST Database


DrC_02730

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02730
         (423 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7RRM4|TIP_PLAYO  T-cell immunomodulatory protein homolog...    30   2.1  
sp|Q61315|APC_MOUSE  Adenomatous polyposis coli protein (APC...    29   4.6  
sp|Q7TSL0|IFNK_MOUSE  Interferon kappa precursor (IFN-kappa)       28   6.0  
sp|P36023|YK44_YEAST  Putative 101.8 kDa transcriptional reg...    28   6.0  
sp|P70478|APC_RAT  Adenomatous polyposis coli protein (APC p...    28   7.9  
sp|P98084|APBA2_MOUSE  Amyloid beta A4 precursor protein-bin...    28   7.9  
>sp|Q7RRM4|TIP_PLAYO T-cell immunomodulatory protein homolog precursor
          Length = 701

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 219 SNNRETHTHNLQISTYLEFVFSL*EKSNLQYGKIFFQIKKTKIL 350
           SNN + HT   +   Y +F+ SL E +   Y   FF I +  IL
Sbjct: 453 SNNEQNHTDIRRFYNYYQFISSLEESTPDVYNAAFFDIFENGIL 496
>sp|Q61315|APC_MOUSE Adenomatous polyposis coli protein (APC protein) (mAPC)
          Length = 2845

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 2    QQNTNNDETPAEGGETSGEQPEGEAPKPSDE 94
            Q+N N +ET +E  E S E  + E  KP  E
Sbjct: 1528 QENDNGNETESEQPEESNENQDKEVEKPDSE 1558
>sp|Q7TSL0|IFNK_MOUSE Interferon kappa precursor (IFN-kappa)
          Length = 199

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 303 LQYGKIFFQIKKTKILTFR*SFQF*WKFVEISQIKCYLIF 422
           L+ GK FF+IKK  ++  + SF   WK V +   +C++IF
Sbjct: 141 LELGKYFFRIKKF-LINKKYSFCA-WKIVTVEIRRCFIIF 178
>sp|P36023|YK44_YEAST Putative 101.8 kDa transcriptional regulatory protein in LAS1-CCP1
           intergenic region
          Length = 863

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +3

Query: 210 SLNSNNRETHTHNLQISTYLEFVFSL*EKSNLQYGKIFFQIKKTKILTFR*SFQF*WKFV 389
           SL+ N +ET  H      ++  +FSL    +L +G++ F      I  F  SFQ  W  V
Sbjct: 531 SLSKNEKETMRHFDFEMEWIIDLFSL----SLLHGEMIFYEYDCNITKFYKSFQDLWDMV 586

Query: 390 EISQIKCYLIF 422
                KCY  F
Sbjct: 587 IHISEKCYNYF 597
>sp|P70478|APC_RAT Adenomatous polyposis coli protein (APC protein)
          Length = 2842

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 2    QQNTNNDETPAEGGETSGEQPEGEAPKPSDE 94
            Q+N N +ET  E  E S E  + E  KP  E
Sbjct: 1528 QENDNGNETEPEQPEESNENQDKEVEKPDSE 1558
>sp|P98084|APBA2_MOUSE Amyloid beta A4 precursor protein-binding family A member 2
           (Neuron-specific X11L protein) (Neuronal
           Munc18-1-interacting protein 2) (Mint-2) (Adapter
           protein X11beta)
          Length = 750

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 26  TPAEGGETSGEQPEGEAPKPSDEP 97
           T + G E S E P+G  P P D+P
Sbjct: 149 THSHGAENSQEYPDGHLPIPEDDP 172
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,524,236
Number of Sequences: 369166
Number of extensions: 561658
Number of successful extensions: 1710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)