Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_H08
(423 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7RRM4|TIP_PLAYO T-cell immunomodulatory protein homolog... 30 2.1
sp|Q61315|APC_MOUSE Adenomatous polyposis coli protein (APC... 29 4.6
sp|Q7TSL0|IFNK_MOUSE Interferon kappa precursor (IFN-kappa) 28 6.0
sp|P36023|YK44_YEAST Putative 101.8 kDa transcriptional reg... 28 6.0
sp|P70478|APC_RAT Adenomatous polyposis coli protein (APC p... 28 7.9
sp|P98084|APBA2_MOUSE Amyloid beta A4 precursor protein-bin... 28 7.9
>sp|Q7RRM4|TIP_PLAYO T-cell immunomodulatory protein homolog precursor
Length = 701
Score = 30.0 bits (66), Expect = 2.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 219 SNNRETHTHNLQISTYLEFVFSL*EKSNLQYGKIFFQIKKTKIL 350
SNN + HT + Y +F+ SL E + Y FF I + IL
Sbjct: 453 SNNEQNHTDIRRFYNYYQFISSLEESTPDVYNAAFFDIFENGIL 496
>sp|Q61315|APC_MOUSE Adenomatous polyposis coli protein (APC protein) (mAPC)
Length = 2845
Score = 28.9 bits (63), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 2 QQNTNNDETPAEGGETSGEQPEGEAPKPSDE 94
Q+N N +ET +E E S E + E KP E
Sbjct: 1528 QENDNGNETESEQPEESNENQDKEVEKPDSE 1558
>sp|Q7TSL0|IFNK_MOUSE Interferon kappa precursor (IFN-kappa)
Length = 199
Score = 28.5 bits (62), Expect = 6.0
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 303 LQYGKIFFQIKKTKILTFR*SFQF*WKFVEISQIKCYLIF 422
L+ GK FF+IKK ++ + SF WK V + +C++IF
Sbjct: 141 LELGKYFFRIKKF-LINKKYSFCA-WKIVTVEIRRCFIIF 178
>sp|P36023|YK44_YEAST Putative 101.8 kDa transcriptional regulatory protein in LAS1-CCP1
intergenic region
Length = 863
Score = 28.5 bits (62), Expect = 6.0
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +3
Query: 210 SLNSNNRETHTHNLQISTYLEFVFSL*EKSNLQYGKIFFQIKKTKILTFR*SFQF*WKFV 389
SL+ N +ET H ++ +FSL +L +G++ F I F SFQ W V
Sbjct: 531 SLSKNEKETMRHFDFEMEWIIDLFSL----SLLHGEMIFYEYDCNITKFYKSFQDLWDMV 586
Query: 390 EISQIKCYLIF 422
KCY F
Sbjct: 587 IHISEKCYNYF 597
>sp|P70478|APC_RAT Adenomatous polyposis coli protein (APC protein)
Length = 2842
Score = 28.1 bits (61), Expect = 7.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 2 QQNTNNDETPAEGGETSGEQPEGEAPKPSDE 94
Q+N N +ET E E S E + E KP E
Sbjct: 1528 QENDNGNETEPEQPEESNENQDKEVEKPDSE 1558
>sp|P98084|APBA2_MOUSE Amyloid beta A4 precursor protein-binding family A member 2
(Neuron-specific X11L protein) (Neuronal
Munc18-1-interacting protein 2) (Mint-2) (Adapter
protein X11beta)
Length = 750
Score = 28.1 bits (61), Expect = 7.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 26 TPAEGGETSGEQPEGEAPKPSDEP 97
T + G E S E P+G P P D+P
Sbjct: 149 THSHGAENSQEYPDGHLPIPEDDP 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,524,236
Number of Sequences: 369166
Number of extensions: 561658
Number of successful extensions: 1710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)