Planaria EST Database


DrC_02729

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02729
         (559 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03346|MPPB_RAT  Mitochondrial processing peptidase beta ...   159   4e-39
sp|Q9CXT8|MPPB_MOUSE  Mitochondrial processing peptidase bet...   158   1e-38
sp|O75439|MPPB_HUMAN  Mitochondrial processing peptidase bet...   154   1e-37
sp|P31930|UQCR1_HUMAN  Ubiquinol-cytochrome-c reductase comp...   152   4e-37
sp|P31800|UQCR1_BOVIN  Ubiquinol-cytochrome-c reductase comp...   147   1e-35
sp|Q9Y8B5|MPPB_LENED  Mitochondrial processing peptidase bet...   145   5e-35
sp|Q9CZ13|UQCR1_MOUSE  Ubiquinol-cytochrome-c reductase comp...   144   1e-34
sp|P43264|UQCR1_EUGGR  Ubiquinol-cytochrome-c reductase comp...   140   2e-33
sp|Q9P7X1|MPPB_SCHPO  Probable mitochondrial processing pept...   140   2e-33
sp|P11913|MPPB_NEUCR  Mitochondrial processing peptidase bet...   134   1e-31
>sp|Q03346|MPPB_RAT Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP) (P-52)
          Length = 489

 Score =  159 bits (402), Expect = 4e-39
 Identities = 80/159 (50%), Positives = 101/159 (63%)
 Frame = +3

Query: 75  LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
           +PE +V+ L N  RV SEN     CTVGLW+D GSR E +KNNG AHFLEHM FKGT  R
Sbjct: 55  VPETQVTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKR 114

Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
               +++E     A L AYTSRE    YA    KDL  AV +L +I+      +  IE+ 
Sbjct: 115 SQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERE 174

Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
           +  +L+EM+ +  N +EVVFDY+HATAYQ T LGR+ILG
Sbjct: 175 RGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILG 213
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP) (P-52)
          Length = 489

 Score =  158 bits (399), Expect = 1e-38
 Identities = 79/159 (49%), Positives = 101/159 (63%)
 Frame = +3

Query: 75  LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
           +PE +V+ L N  RV SEN     CTVGLW+D GSR E +KNNG AHFLEHM FKGT  R
Sbjct: 55  VPETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKR 114

Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
               +++E     A L AYTSRE    YA    +DL  AV +L +I+      +  IE+ 
Sbjct: 115 SQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERE 174

Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
           +  +L+EM+ +  N +EVVFDY+HATAYQ T LGR+ILG
Sbjct: 175 RGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILG 213
>sp|O75439|MPPB_HUMAN Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP) (P-52)
          Length = 489

 Score =  154 bits (390), Expect = 1e-37
 Identities = 78/159 (49%), Positives = 100/159 (62%)
 Frame = +3

Query: 75  LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
           +PE  V+ L +  RV SE+     CTVGLW+D GSR E +KNNG AHFLEHM FKGT  R
Sbjct: 55  VPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKR 114

Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
               +++E     A L AYTSRE    YA    KDL  AV +L +I+      +  IE+ 
Sbjct: 115 SQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERE 174

Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
           +  +L+EM+ +  N +EVVFDY+HATAYQ T LGR+ILG
Sbjct: 175 RGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILG 213
>sp|P31930|UQCR1_HUMAN Ubiquinol-cytochrome-c reductase complex core protein I,
           mitochondrial precursor
          Length = 480

 Score =  152 bits (385), Expect = 4e-37
 Identities = 75/159 (47%), Positives = 105/159 (66%)
 Frame = +3

Query: 75  LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
           +PE +VS L+N  RV SE      CTVG+W+D+GSR ET+KNNG  +FLEH+ FKGT +R
Sbjct: 45  VPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNR 104

Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
               ++ E     A L AY++RE  A Y     KDL  AV LLG+IV     +D+ IEK 
Sbjct: 105 PGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKE 164

Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
           ++ +L+EM+    + R+VVF+Y+HATA+QGTPL +++ G
Sbjct: 165 RDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEG 203
>sp|P31800|UQCR1_BOVIN Ubiquinol-cytochrome-c reductase complex core protein I,
           mitochondrial precursor
          Length = 480

 Score =  147 bits (372), Expect = 1e-35
 Identities = 72/159 (45%), Positives = 104/159 (65%)
 Frame = +3

Query: 75  LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
           +PE +VS+L+N  RV SE      CTVG+W+D GSR E++KNNG  +F+EH+ FKGT +R
Sbjct: 45  VPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNR 104

Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
               ++ E     A L AY++RE  A Y     KDL  AV LL +IV     +D+ IEK 
Sbjct: 105 PGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKE 164

Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
           ++ +L+E++    + R+VVF+Y+HATA+QGTPL +S+ G
Sbjct: 165 RDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEG 203
>sp|Q9Y8B5|MPPB_LENED Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP)
          Length = 466

 Score =  145 bits (367), Expect = 5e-35
 Identities = 71/159 (44%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
 Frame = +3

Query: 78  PEAEVSKLNNDFRVISENW-RSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
           P  E+S L+N   V +E+   ++  TVG+W+D GSR ETDK NG AHFLEHM FKGT  R
Sbjct: 27  PFTEISTLSNGLTVATESQPHAQTATVGVWIDAGSRAETDKTNGTAHFLEHMAFKGTGRR 86

Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
               +++E     A L AYTSRE    YA    KD+  AV ++ +I+   K +   IE+ 
Sbjct: 87  SQHALELEVENIGAHLNAYTSREQTVYYAKSFSKDVPVAVDIISDILQNSKLESGAIERE 146

Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
           ++ +L+E + +     EVVFD++HA A+QG PLGR+ILG
Sbjct: 147 RDVILREQQEVDKQLEEVVFDHLHAVAFQGQPLGRTILG 185
>sp|Q9CZ13|UQCR1_MOUSE Ubiquinol-cytochrome-c reductase complex core protein I,
           mitochondrial precursor
          Length = 480

 Score =  144 bits (363), Expect = 1e-34
 Identities = 75/167 (44%), Positives = 105/167 (62%)
 Frame = +3

Query: 51  FPRFLQNELPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHM 230
           F + LQ+ +PE +VS L+N  RV SE      CTVG+W+D GSR ET+KNNG  +FLEH+
Sbjct: 38  FAQALQS-VPETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHL 96

Query: 231 YFKGTNSRDHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKY 410
            FKGT +R    ++ E     A L AY++RE  A       KDL   V LL +IV     
Sbjct: 97  AFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSL 156

Query: 411 DDNLIEKSKENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
           +D+ IEK ++ +L+EM+    + + VVFDY+HATA+QGTPL +++ G
Sbjct: 157 EDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEG 203
>sp|P43264|UQCR1_EUGGR Ubiquinol-cytochrome-c reductase complex core protein I,
           mitochondrial precursor
          Length = 494

 Score =  140 bits (353), Expect = 2e-33
 Identities = 71/163 (43%), Positives = 100/163 (61%)
 Frame = +3

Query: 63  LQNELPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKG 242
           LQN LP        N FR+ SE+   + CTVG+W+D GSR ET+KNNGVAHFLEHM FKG
Sbjct: 28  LQNALP--------NGFRIASESKDGDTCTVGVWIDAGSRWETEKNNGVAHFLEHMNFKG 79

Query: 243 TNSRDHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNL 422
           T  R  + I+    +  A L AYTSRE    Y  C KKD+  AV +L +I+   K  +  
Sbjct: 80  TGKRSRQDIEFGMEKMGAHLNAYTSREHTCYYVKCFKKDVPEAVDILADILLNSKRTEQD 139

Query: 423 IEKSKENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
           ++  ++ +++E E +     EV+ D++H+ A++G+ LG SILG
Sbjct: 140 LDAERQTIVQEKEDVEARIDEVLMDHLHSAAFEGSGLGLSILG 182
>sp|Q9P7X1|MPPB_SCHPO Probable mitochondrial processing peptidase beta subunit,
           mitochondrial precursor (Beta-MPP) (PEP)
          Length = 457

 Score =  140 bits (353), Expect = 2e-33
 Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
 Frame = +3

Query: 57  RFLQNELPEAEVSKLNNDFRVISENWR-SEICTVGLWMDIGSRCETDKNNGVAHFLEHMY 233
           RF    LP+ E + L N   V +E+   ++  TV + +D GSR ET KNNG AHFLEH+ 
Sbjct: 13  RFATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLA 72

Query: 234 FKGTNSRDHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYD 413
           FKGT +R  K +++E     A L AYTSRE    YA+  K  +  AV +L +I+      
Sbjct: 73  FKGTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSIS 132

Query: 414 DNLIEKSKENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
            + +E+ ++ +L+E E +   A EVVFD++HATAYQG PLGR+ILG
Sbjct: 133 ASAVERERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILG 178
>sp|P11913|MPPB_NEUCR Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP) (Ubiquinol-cytochrome-c reductase
           complex core protein I)
          Length = 476

 Score =  134 bits (338), Expect = 1e-31
 Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
 Frame = +3

Query: 81  EAEVSKLNNDFRVISE-NWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSRD 257
           + + + L N   V S+ +  ++  TVG+W+D GSR ETD+ NG AHFLEH+ FKGT  R 
Sbjct: 39  KTQTTTLKNGLTVASQYSPYAQTSTVGMWIDAGSRAETDETNGTAHFLEHLAFKGTTKRT 98

Query: 258 HKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKSK 437
            + +++E     A L AYTSRE    +A    +D+   V +L +I+   K +++ IE+ +
Sbjct: 99  QQQLELEIENMGAHLNAYTSRENTVYFAKALNEDVPKCVDILQDILQNSKLEESAIERER 158

Query: 438 ENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
           + +L+E E +     EVVFD++HATAYQ  PLGR+ILG
Sbjct: 159 DVILRESEEVEKQLEEVVFDHLHATAYQHQPLGRTILG 196
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,155,887
Number of Sequences: 369166
Number of extensions: 1418976
Number of successful extensions: 4241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4236
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)