Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_H04
(559 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03346|MPPB_RAT Mitochondrial processing peptidase beta ... 159 4e-39
sp|Q9CXT8|MPPB_MOUSE Mitochondrial processing peptidase bet... 158 1e-38
sp|O75439|MPPB_HUMAN Mitochondrial processing peptidase bet... 154 1e-37
sp|P31930|UQCR1_HUMAN Ubiquinol-cytochrome-c reductase comp... 152 4e-37
sp|P31800|UQCR1_BOVIN Ubiquinol-cytochrome-c reductase comp... 147 1e-35
sp|Q9Y8B5|MPPB_LENED Mitochondrial processing peptidase bet... 145 5e-35
sp|Q9CZ13|UQCR1_MOUSE Ubiquinol-cytochrome-c reductase comp... 144 1e-34
sp|P43264|UQCR1_EUGGR Ubiquinol-cytochrome-c reductase comp... 140 2e-33
sp|Q9P7X1|MPPB_SCHPO Probable mitochondrial processing pept... 140 2e-33
sp|P11913|MPPB_NEUCR Mitochondrial processing peptidase bet... 134 1e-31
>sp|Q03346|MPPB_RAT Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (P-52)
Length = 489
Score = 159 bits (402), Expect = 4e-39
Identities = 80/159 (50%), Positives = 101/159 (63%)
Frame = +3
Query: 75 LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
+PE +V+ L N RV SEN CTVGLW+D GSR E +KNNG AHFLEHM FKGT R
Sbjct: 55 VPETQVTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKR 114
Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
+++E A L AYTSRE YA KDL AV +L +I+ + IE+
Sbjct: 115 SQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERE 174
Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
+ +L+EM+ + N +EVVFDY+HATAYQ T LGR+ILG
Sbjct: 175 RGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILG 213
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (P-52)
Length = 489
Score = 158 bits (399), Expect = 1e-38
Identities = 79/159 (49%), Positives = 101/159 (63%)
Frame = +3
Query: 75 LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
+PE +V+ L N RV SEN CTVGLW+D GSR E +KNNG AHFLEHM FKGT R
Sbjct: 55 VPETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKR 114
Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
+++E A L AYTSRE YA +DL AV +L +I+ + IE+
Sbjct: 115 SQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERE 174
Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
+ +L+EM+ + N +EVVFDY+HATAYQ T LGR+ILG
Sbjct: 175 RGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILG 213
>sp|O75439|MPPB_HUMAN Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (P-52)
Length = 489
Score = 154 bits (390), Expect = 1e-37
Identities = 78/159 (49%), Positives = 100/159 (62%)
Frame = +3
Query: 75 LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
+PE V+ L + RV SE+ CTVGLW+D GSR E +KNNG AHFLEHM FKGT R
Sbjct: 55 VPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKR 114
Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
+++E A L AYTSRE YA KDL AV +L +I+ + IE+
Sbjct: 115 SQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERE 174
Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
+ +L+EM+ + N +EVVFDY+HATAYQ T LGR+ILG
Sbjct: 175 RGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILG 213
>sp|P31930|UQCR1_HUMAN Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 480
Score = 152 bits (385), Expect = 4e-37
Identities = 75/159 (47%), Positives = 105/159 (66%)
Frame = +3
Query: 75 LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
+PE +VS L+N RV SE CTVG+W+D+GSR ET+KNNG +FLEH+ FKGT +R
Sbjct: 45 VPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNR 104
Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
++ E A L AY++RE A Y KDL AV LLG+IV +D+ IEK
Sbjct: 105 PGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKE 164
Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
++ +L+EM+ + R+VVF+Y+HATA+QGTPL +++ G
Sbjct: 165 RDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEG 203
>sp|P31800|UQCR1_BOVIN Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 480
Score = 147 bits (372), Expect = 1e-35
Identities = 72/159 (45%), Positives = 104/159 (65%)
Frame = +3
Query: 75 LPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
+PE +VS+L+N RV SE CTVG+W+D GSR E++KNNG +F+EH+ FKGT +R
Sbjct: 45 VPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNR 104
Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
++ E A L AY++RE A Y KDL AV LL +IV +D+ IEK
Sbjct: 105 PGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKE 164
Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
++ +L+E++ + R+VVF+Y+HATA+QGTPL +S+ G
Sbjct: 165 RDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEG 203
>sp|Q9Y8B5|MPPB_LENED Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP)
Length = 466
Score = 145 bits (367), Expect = 5e-35
Identities = 71/159 (44%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
Frame = +3
Query: 78 PEAEVSKLNNDFRVISENW-RSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSR 254
P E+S L+N V +E+ ++ TVG+W+D GSR ETDK NG AHFLEHM FKGT R
Sbjct: 27 PFTEISTLSNGLTVATESQPHAQTATVGVWIDAGSRAETDKTNGTAHFLEHMAFKGTGRR 86
Query: 255 DHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKS 434
+++E A L AYTSRE YA KD+ AV ++ +I+ K + IE+
Sbjct: 87 SQHALELEVENIGAHLNAYTSREQTVYYAKSFSKDVPVAVDIISDILQNSKLESGAIERE 146
Query: 435 KENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
++ +L+E + + EVVFD++HA A+QG PLGR+ILG
Sbjct: 147 RDVILREQQEVDKQLEEVVFDHLHAVAFQGQPLGRTILG 185
>sp|Q9CZ13|UQCR1_MOUSE Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 480
Score = 144 bits (363), Expect = 1e-34
Identities = 75/167 (44%), Positives = 105/167 (62%)
Frame = +3
Query: 51 FPRFLQNELPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHM 230
F + LQ+ +PE +VS L+N RV SE CTVG+W+D GSR ET+KNNG +FLEH+
Sbjct: 38 FAQALQS-VPETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHL 96
Query: 231 YFKGTNSRDHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKY 410
FKGT +R ++ E A L AY++RE A KDL V LL +IV
Sbjct: 97 AFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSL 156
Query: 411 DDNLIEKSKENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
+D+ IEK ++ +L+EM+ + + VVFDY+HATA+QGTPL +++ G
Sbjct: 157 EDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEG 203
>sp|P43264|UQCR1_EUGGR Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 494
Score = 140 bits (353), Expect = 2e-33
Identities = 71/163 (43%), Positives = 100/163 (61%)
Frame = +3
Query: 63 LQNELPEAEVSKLNNDFRVISENWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKG 242
LQN LP N FR+ SE+ + CTVG+W+D GSR ET+KNNGVAHFLEHM FKG
Sbjct: 28 LQNALP--------NGFRIASESKDGDTCTVGVWIDAGSRWETEKNNGVAHFLEHMNFKG 79
Query: 243 TNSRDHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNL 422
T R + I+ + A L AYTSRE Y C KKD+ AV +L +I+ K +
Sbjct: 80 TGKRSRQDIEFGMEKMGAHLNAYTSREHTCYYVKCFKKDVPEAVDILADILLNSKRTEQD 139
Query: 423 IEKSKENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
++ ++ +++E E + EV+ D++H+ A++G+ LG SILG
Sbjct: 140 LDAERQTIVQEKEDVEARIDEVLMDHLHSAAFEGSGLGLSILG 182
>sp|Q9P7X1|MPPB_SCHPO Probable mitochondrial processing peptidase beta subunit,
mitochondrial precursor (Beta-MPP) (PEP)
Length = 457
Score = 140 bits (353), Expect = 2e-33
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Frame = +3
Query: 57 RFLQNELPEAEVSKLNNDFRVISENWR-SEICTVGLWMDIGSRCETDKNNGVAHFLEHMY 233
RF LP+ E + L N V +E+ ++ TV + +D GSR ET KNNG AHFLEH+
Sbjct: 13 RFATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLA 72
Query: 234 FKGTNSRDHKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYD 413
FKGT +R K +++E A L AYTSRE YA+ K + AV +L +I+
Sbjct: 73 FKGTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSIS 132
Query: 414 DNLIEKSKENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
+ +E+ ++ +L+E E + A EVVFD++HATAYQG PLGR+ILG
Sbjct: 133 ASAVERERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILG 178
>sp|P11913|MPPB_NEUCR Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (Ubiquinol-cytochrome-c reductase
complex core protein I)
Length = 476
Score = 134 bits (338), Expect = 1e-31
Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = +3
Query: 81 EAEVSKLNNDFRVISE-NWRSEICTVGLWMDIGSRCETDKNNGVAHFLEHMYFKGTNSRD 257
+ + + L N V S+ + ++ TVG+W+D GSR ETD+ NG AHFLEH+ FKGT R
Sbjct: 39 KTQTTTLKNGLTVASQYSPYAQTSTVGMWIDAGSRAETDETNGTAHFLEHLAFKGTTKRT 98
Query: 258 HKTIQMETLERNASLGAYTSRETIALYANCHKKDLEWAVGLLGEIVATDKYDDNLIEKSK 437
+ +++E A L AYTSRE +A +D+ V +L +I+ K +++ IE+ +
Sbjct: 99 QQQLELEIENMGAHLNAYTSRENTVYFAKALNEDVPKCVDILQDILQNSKLEESAIERER 158
Query: 438 ENVLKEMEAIGNNAREVVFDYIHATAYQGTPLGRSILG 551
+ +L+E E + EVVFD++HATAYQ PLGR+ILG
Sbjct: 159 DVILRESEEVEKQLEEVVFDHLHATAYQHQPLGRTILG 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,155,887
Number of Sequences: 369166
Number of extensions: 1418976
Number of successful extensions: 4241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4236
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)