Planaria EST Database


DrC_02713

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02713
         (701 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51532|SMCA4_HUMAN  Possible global transcription activat...    35   0.25 
sp|P51531|SMCA2_HUMAN  Possible global transcription activat...    35   0.25 
sp|P25439|BRM_DROME  Homeotic gene regulator (Brahma protein)      34   0.43 
sp|Q9NZW4|DSPP_HUMAN  Dentin sialophosphoprotein precursor [...    32   1.2  
sp|Q6GDH2|CLFB_STAAR  Clumping factor B precursor (Fibrinoge...    32   1.2  
sp|Q7A382|CLFB_STAAN  Clumping factor B precursor (Fibrinoge...    32   1.6  
sp|Q5HCR7|CLFB_STAAC  Clumping factor B precursor (Fibrinoge...    32   1.6  
sp|Q02086|SP2_HUMAN  Transcription factor Sp2                      31   3.6  
sp|Q12315|GLE1_YEAST  Nucleoporin GLE1 (Nuclear pore protein...    31   3.6  
sp|O52191|ENO_STRTR  Enolase (2-phosphoglycerate dehydratase...    30   4.7  
>sp|P51532|SMCA4_HUMAN Possible global transcription activator SNF2L4 (SNF2-beta) (BRG-1
            protein) (Mitotic growth and transcription activator)
            (Brahma protein homolog 1) (SWI/SNF-related matrix
            associated actin dependent regulator of chromatin
            subfamily A member 4)
          Length = 1647

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
 Frame = +2

Query: 215  WNYRVVDY*IRCNHRV--HHMLVEGVFENILYHHY-------LHHLPTQKIIPTVWLILQ 367
            W Y +VD      HR+  HH  +      +L  HY       L   P Q  +P +W +L 
Sbjct: 875  WKYMIVDE----GHRMKNHHCKLT----QVLNTHYVAPRRLLLTGTPLQNKLPELWALLN 926

Query: 368  PVIIIIWKQILSMNTHQHLAKLLINLEPVP*R*EVTVKPILLLTKVLKPALFMRIKKIVK 547
             ++  I+K   +     + A   +  E V    E T+  I  L KVL+P L  R+KK V+
Sbjct: 927  FLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVE 985
>sp|P51531|SMCA2_HUMAN Possible global transcription activator SNF2L2 (SNF2-alpha)
            (SWI/SNF-related matrix associated actin dependent
            regulator of chromatin subfamily A member 2)
          Length = 1586

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
 Frame = +2

Query: 215  WNYRVVDY*IRCNHRV--HHMLVEGVFENILYHHY-------LHHLPTQKIIPTVWLILQ 367
            W Y +VD      HR+  HH  +      +L  HY       L   P Q  +P +W +L 
Sbjct: 841  WKYMIVDE----GHRMKNHHCKLT----QVLNTHYVAPRRILLTGTPLQNKLPELWALLN 892

Query: 368  PVIIIIWKQILSMNTHQHLAKLLINLEPVP*R*EVTVKPILLLTKVLKPALFMRIKKIVK 547
             ++  I+K   +     + A   +  E V    E T+  I  L KVL+P L  R+KK V+
Sbjct: 893  FLLPTIFKSCSTFEQWFN-APFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVE 951

Query: 548  T 550
            +
Sbjct: 952  S 952
>sp|P25439|BRM_DROME Homeotic gene regulator (Brahma protein)
          Length = 1638

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
 Frame = +2

Query: 215  WNYRVVDY*IRCNHRV--HHMLVEGVFENIL---YHHYLHHLPTQKIIPTVWLILQPVII 379
            W Y ++D      HR+  HH  +  V        Y   L   P Q  +P +W +L  ++ 
Sbjct: 894  WKYMIIDE----GHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLP 949

Query: 380  IIWKQILSMNTHQHLAKLLINLEPVP*R*EVTVKPILLLTKVLKPALFMRIKKIVK 547
             I+K   +     + A      E V    E T+  I  L KVL+P L  R+KK V+
Sbjct: 950  SIFKSCSTFEQWFN-APFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 1004
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin
           phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
           sialoprotein (DSP)]
          Length = 1253

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 24/76 (31%), Positives = 37/76 (48%)
 Frame = +1

Query: 337 NNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIIDESLKTS 516
           NNSDS  +   GN++N ++DS    S +     D S +S     SDS      D +  + 
Sbjct: 522 NNSDSNGNGNNGNDDNDKSDSGKGKSDSSDS--DSSDSSNSSDSSDSSDSDSSDSNSSSD 579

Query: 517 LIYADQENSEDSDSIS 564
              +D ++S+ SDS S
Sbjct: 580 SDSSDSDSSDSSDSDS 595
>sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinogen-binding protein B)
           (Fibrinogen receptor B)
          Length = 873

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
 Frame = +1

Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIID---ES 504
           +++SDS +D+ + ++++ E+DS  +  S      D    S     SDS++    D   ES
Sbjct: 721 DSDSDSDSDSDSDSDSDSESDSESDSDSDSESDSDSDPDSESDSDSDSDSDSDSDSDSES 780

Query: 505 LKTSLIYADQENSEDSDSISKIT 573
              S   +D ++  DSDS S++T
Sbjct: 781 DSDSESDSDSDSDSDSDSDSRVT 803

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +1

Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIIDESLKT 513
           +++SDS +D+ + +N++ E+DS  +  S      D    S     SDSE+    D    +
Sbjct: 605 DSDSDSDSDSDSDSNSDSESDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSDSDSDSDS 664

Query: 514 SLIYADQENSEDSDSIS 564
               +D ++  DSDS S
Sbjct: 665 D---SDSDSDSDSDSDS 678

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +1

Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIID-ESLK 510
           +++SDS +D+ + ++++ E+DS  +  S      D    S     SDS++    D +S  
Sbjct: 635 DSDSDSDSDSDSDSDSDSESDSDSDSDSDSDSDSDSDSDSDSDSNSDSDSDSDSDSDSDS 694

Query: 511 TSLIYADQENSEDSDSIS 564
            S   +D E+  DSDS S
Sbjct: 695 DSDSDSDSESDSDSDSDS 712
>sp|Q7A382|CLFB_STAAN Clumping factor B precursor (Fibrinogen-binding protein B)
           (Fibrinogen receptor B)
 sp|Q99R07|CLFB_STAAM Clumping factor B precursor (Fibrinogen-binding protein B)
           (Fibrinogen receptor B)
          Length = 877

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = +1

Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIIDESLKT 513
           +++SDS +D+ +G++++ E+DS  +  S      D    S  +  SDS++    D     
Sbjct: 587 DSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDSDSESDSDSESDSDSDSDSDSDSD--- 643

Query: 514 SLIYADQENSEDSDSIS 564
               +D E+  DSDS S
Sbjct: 644 ----SDSESDSDSDSDS 656

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 25/77 (32%), Positives = 39/77 (50%)
 Frame = +1

Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIIDESLKT 513
           E++SDS +D+ + ++++ E+DS  E  S      D    S     SDS++    D S   
Sbjct: 647 ESDSDSDSDSDSDSDSDSESDSDSESDSESDSDSDSDSDSDSDSDSDSDSDSDSD-SDSD 705

Query: 514 SLIYADQENSEDSDSIS 564
           S   +D E+  DSDS S
Sbjct: 706 SDSDSDSESDSDSDSDS 722
>sp|Q5HCR7|CLFB_STAAC Clumping factor B precursor (Fibrinogen-binding protein B)
           (Fibrinogen receptor B)
          Length = 913

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +1

Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIID-ESLK 510
           +++SDS +D+ +G++++ E+DS  +  S      D    S  +  SDS++    D +S  
Sbjct: 587 DSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDSDSESDSDSESDSDSDSDSDSDSDSDS 646

Query: 511 TSLIYADQENSEDSDSISK 567
            S   +D ++  DSDS S+
Sbjct: 647 DSDSDSDSDSDSDSDSDSE 665
>sp|Q02086|SP2_HUMAN Transcription factor Sp2
          Length = 606

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
 Frame = +1

Query: 1   LATSSPTQSLPSPELPDDIMHSSLTT---------IKSMGSDS-------IYDEVCSSDT 132
           + T SP+   P P  P  I  SS TT         +K  G          + + V +SDT
Sbjct: 159 IITPSPSSHKPVPIKPAPIQKSSTTTTPVQSGANVVKLTGGGGNVTLTLPVNNLVNASDT 218

Query: 133 -KESDLYEEAPPTPIT-NNHYQRRWSSPAVELP 225
              + L  E+PPTP++  N   R+ S PA + P
Sbjct: 219 GAPTQLLTESPPTPLSKTNKKARKKSLPASQPP 251
>sp|Q12315|GLE1_YEAST Nucleoporin GLE1 (Nuclear pore protein GLE1) (RNA export factor
           GLE1)
          Length = 538

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 103 IYDEVCSSDTKESDLYEEAPPTPITNNHYQRRWSSPAVELPS 228
           ++DEV +SDT   +  E    T  T++       SPA++LPS
Sbjct: 4   VFDEVFNSDTDSPEFEETCSTTSSTSSQCPTPEPSPAIKLPS 45
>sp|O52191|ENO_STRTR Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate
           hydro-lyase)
          Length = 422

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -3

Query: 552 TVFTIFLIRINKAGFKTFVNNRIGFTVTSYL 460
           T+ TI L R  KAG+KT +++R G TV SY+
Sbjct: 347 TIETISLAR--KAGYKTMISHRSGETVDSYI 375
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.307    0.122    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,781,703
Number of Sequences: 369166
Number of extensions: 1522089
Number of successful extensions: 3924
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3890
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)