Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_E04
(701 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51532|SMCA4_HUMAN Possible global transcription activat... 35 0.25
sp|P51531|SMCA2_HUMAN Possible global transcription activat... 35 0.25
sp|P25439|BRM_DROME Homeotic gene regulator (Brahma protein) 34 0.43
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [... 32 1.2
sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinoge... 32 1.2
sp|Q7A382|CLFB_STAAN Clumping factor B precursor (Fibrinoge... 32 1.6
sp|Q5HCR7|CLFB_STAAC Clumping factor B precursor (Fibrinoge... 32 1.6
sp|Q02086|SP2_HUMAN Transcription factor Sp2 31 3.6
sp|Q12315|GLE1_YEAST Nucleoporin GLE1 (Nuclear pore protein... 31 3.6
sp|O52191|ENO_STRTR Enolase (2-phosphoglycerate dehydratase... 30 4.7
>sp|P51532|SMCA4_HUMAN Possible global transcription activator SNF2L4 (SNF2-beta) (BRG-1
protein) (Mitotic growth and transcription activator)
(Brahma protein homolog 1) (SWI/SNF-related matrix
associated actin dependent regulator of chromatin
subfamily A member 4)
Length = 1647
Score = 34.7 bits (78), Expect = 0.25
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Frame = +2
Query: 215 WNYRVVDY*IRCNHRV--HHMLVEGVFENILYHHY-------LHHLPTQKIIPTVWLILQ 367
W Y +VD HR+ HH + +L HY L P Q +P +W +L
Sbjct: 875 WKYMIVDE----GHRMKNHHCKLT----QVLNTHYVAPRRLLLTGTPLQNKLPELWALLN 926
Query: 368 PVIIIIWKQILSMNTHQHLAKLLINLEPVP*R*EVTVKPILLLTKVLKPALFMRIKKIVK 547
++ I+K + + A + E V E T+ I L KVL+P L R+KK V+
Sbjct: 927 FLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVE 985
>sp|P51531|SMCA2_HUMAN Possible global transcription activator SNF2L2 (SNF2-alpha)
(SWI/SNF-related matrix associated actin dependent
regulator of chromatin subfamily A member 2)
Length = 1586
Score = 34.7 bits (78), Expect = 0.25
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Frame = +2
Query: 215 WNYRVVDY*IRCNHRV--HHMLVEGVFENILYHHY-------LHHLPTQKIIPTVWLILQ 367
W Y +VD HR+ HH + +L HY L P Q +P +W +L
Sbjct: 841 WKYMIVDE----GHRMKNHHCKLT----QVLNTHYVAPRRILLTGTPLQNKLPELWALLN 892
Query: 368 PVIIIIWKQILSMNTHQHLAKLLINLEPVP*R*EVTVKPILLLTKVLKPALFMRIKKIVK 547
++ I+K + + A + E V E T+ I L KVL+P L R+KK V+
Sbjct: 893 FLLPTIFKSCSTFEQWFN-APFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVE 951
Query: 548 T 550
+
Sbjct: 952 S 952
>sp|P25439|BRM_DROME Homeotic gene regulator (Brahma protein)
Length = 1638
Score = 33.9 bits (76), Expect = 0.43
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Frame = +2
Query: 215 WNYRVVDY*IRCNHRV--HHMLVEGVFENIL---YHHYLHHLPTQKIIPTVWLILQPVII 379
W Y ++D HR+ HH + V Y L P Q +P +W +L ++
Sbjct: 894 WKYMIIDE----GHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLP 949
Query: 380 IIWKQILSMNTHQHLAKLLINLEPVP*R*EVTVKPILLLTKVLKPALFMRIKKIVK 547
I+K + + A E V E T+ I L KVL+P L R+KK V+
Sbjct: 950 SIFKSCSTFEQWFN-APFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 1004
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin
phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
sialoprotein (DSP)]
Length = 1253
Score = 32.3 bits (72), Expect = 1.2
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +1
Query: 337 NNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIIDESLKTS 516
NNSDS + GN++N ++DS S + D S +S SDS D + +
Sbjct: 522 NNSDSNGNGNNGNDDNDKSDSGKGKSDSSDS--DSSDSSNSSDSSDSSDSDSSDSNSSSD 579
Query: 517 LIYADQENSEDSDSIS 564
+D ++S+ SDS S
Sbjct: 580 SDSSDSDSSDSSDSDS 595
>sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 873
Score = 32.3 bits (72), Expect = 1.2
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIID---ES 504
+++SDS +D+ + ++++ E+DS + S D S SDS++ D ES
Sbjct: 721 DSDSDSDSDSDSDSDSDSESDSESDSDSDSESDSDSDPDSESDSDSDSDSDSDSDSDSES 780
Query: 505 LKTSLIYADQENSEDSDSISKIT 573
S +D ++ DSDS S++T
Sbjct: 781 DSDSESDSDSDSDSDSDSDSRVT 803
Score = 31.2 bits (69), Expect = 2.8
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIIDESLKT 513
+++SDS +D+ + +N++ E+DS + S D S SDSE+ D +
Sbjct: 605 DSDSDSDSDSDSDSNSDSESDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSDSDSDSDS 664
Query: 514 SLIYADQENSEDSDSIS 564
+D ++ DSDS S
Sbjct: 665 D---SDSDSDSDSDSDS 678
Score = 30.0 bits (66), Expect = 6.2
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIID-ESLK 510
+++SDS +D+ + ++++ E+DS + S D S SDS++ D +S
Sbjct: 635 DSDSDSDSDSDSDSDSDSESDSDSDSDSDSDSDSDSDSDSDSDSNSDSDSDSDSDSDSDS 694
Query: 511 TSLIYADQENSEDSDSIS 564
S +D E+ DSDS S
Sbjct: 695 DSDSDSDSESDSDSDSDS 712
>sp|Q7A382|CLFB_STAAN Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
sp|Q99R07|CLFB_STAAM Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 877
Score = 32.0 bits (71), Expect = 1.6
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +1
Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIIDESLKT 513
+++SDS +D+ +G++++ E+DS + S D S + SDS++ D
Sbjct: 587 DSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDSDSESDSDSESDSDSDSDSDSDSD--- 643
Query: 514 SLIYADQENSEDSDSIS 564
+D E+ DSDS S
Sbjct: 644 ----SDSESDSDSDSDS 656
Score = 30.8 bits (68), Expect = 3.6
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = +1
Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIIDESLKT 513
E++SDS +D+ + ++++ E+DS E S D S SDS++ D S
Sbjct: 647 ESDSDSDSDSDSDSDSDSESDSDSESDSESDSDSDSDSDSDSDSDSDSDSDSDSD-SDSD 705
Query: 514 SLIYADQENSEDSDSIS 564
S +D E+ DSDS S
Sbjct: 706 SDSDSDSESDSDSDSDS 722
>sp|Q5HCR7|CLFB_STAAC Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 913
Score = 32.0 bits (71), Expect = 1.6
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 334 ENNSDSMADTPTGNNNNLETDSVYEYSSTFGKTIDQSRTSTLKIRSDSETYPIID-ESLK 510
+++SDS +D+ +G++++ E+DS + S D S + SDS++ D +S
Sbjct: 587 DSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDSDSESDSDSESDSDSDSDSDSDSDSDS 646
Query: 511 TSLIYADQENSEDSDSISK 567
S +D ++ DSDS S+
Sbjct: 647 DSDSDSDSDSDSDSDSDSE 665
>sp|Q02086|SP2_HUMAN Transcription factor Sp2
Length = 606
Score = 30.8 bits (68), Expect = 3.6
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Frame = +1
Query: 1 LATSSPTQSLPSPELPDDIMHSSLTT---------IKSMGSDS-------IYDEVCSSDT 132
+ T SP+ P P P I SS TT +K G + + V +SDT
Sbjct: 159 IITPSPSSHKPVPIKPAPIQKSSTTTTPVQSGANVVKLTGGGGNVTLTLPVNNLVNASDT 218
Query: 133 -KESDLYEEAPPTPIT-NNHYQRRWSSPAVELP 225
+ L E+PPTP++ N R+ S PA + P
Sbjct: 219 GAPTQLLTESPPTPLSKTNKKARKKSLPASQPP 251
>sp|Q12315|GLE1_YEAST Nucleoporin GLE1 (Nuclear pore protein GLE1) (RNA export factor
GLE1)
Length = 538
Score = 30.8 bits (68), Expect = 3.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 103 IYDEVCSSDTKESDLYEEAPPTPITNNHYQRRWSSPAVELPS 228
++DEV +SDT + E T T++ SPA++LPS
Sbjct: 4 VFDEVFNSDTDSPEFEETCSTTSSTSSQCPTPEPSPAIKLPS 45
>sp|O52191|ENO_STRTR Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate
hydro-lyase)
Length = 422
Score = 30.4 bits (67), Expect = 4.7
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -3
Query: 552 TVFTIFLIRINKAGFKTFVNNRIGFTVTSYL 460
T+ TI L R KAG+KT +++R G TV SY+
Sbjct: 347 TIETISLAR--KAGYKTMISHRSGETVDSYI 375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.307 0.122 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,781,703
Number of Sequences: 369166
Number of extensions: 1522089
Number of successful extensions: 3924
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3890
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)