Planaria EST Database


DrC_02697

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02697
         (414 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CH02|SF04_MOUSE  Splicing factor 4                           152   2e-37
sp|Q68FU8|SF04_RAT  Splicing factor 4                             152   2e-37
sp|Q8IWZ8|SF04_HUMAN  Splicing factor 4 (RNA-binding protein...   151   6e-37
sp|Q8CH09|SFR14_MOUSE  Putative splicing factor, arginine/se...    36   0.035
sp|Q8IX01|SFR14_HUMAN  Putative splicing factor, arginine/se...    36   0.035
sp|P46873|OSM3_CAEEL  Osmotic avoidance abnormal protein 3 (...    34   0.10 
sp|P14435|HA2F_MOUSE  H-2 class II histocompatibility antige...    33   0.23 
sp|Q6ND66|RIMM_RHOPA  Probable 16S rRNA processing protein rimM    31   0.86 
sp|Q03306|PKH3_YEAST  Serine/threonine-protein kinase PKH3 (...    30   1.5  
sp|Q14678|ANR15_HUMAN  Ankyrin repeat domain protein 15 (Kid...    30   1.9  
>sp|Q8CH02|SF04_MOUSE Splicing factor 4
          Length = 643

 Score =  152 bits (385), Expect = 2e-37
 Identities = 74/138 (53%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
 Frame = +3

Query: 9   QKELQGMHEFITAQQKA-KEQELMNSIAGVTYGPAKTKLGQFKFEYDSDE--DAKEGTWE 179
           Q+E+Q M++ I   ++A ++ +L+   A          L Q +  YDSDE  D++ GTWE
Sbjct: 446 QQEMQQMYDMIMQHKRAMQDMQLLWEKA----------LQQHQHGYDSDEEVDSELGTWE 495

Query: 180 HRLRKEEMEATRDWADKLTEMGQGKHHIGDFLPPEELDRFMETFRALKEGREPDYSDYTT 359
           H+LR+ EM+ TR+WA++LT+MG+GKH IGDFLPP+EL++FMETF+ALKEGREPDYS+Y  
Sbjct: 496 HQLRRMEMDKTREWAEQLTQMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKE 555

Query: 360 FKITCENVGFKMLKKMGW 413
           FK+T EN+G++ML KMGW
Sbjct: 556 FKLTVENIGYQMLMKMGW 573
>sp|Q68FU8|SF04_RAT Splicing factor 4
          Length = 644

 Score =  152 bits (385), Expect = 2e-37
 Identities = 74/138 (53%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
 Frame = +3

Query: 9   QKELQGMHEFITAQQKA-KEQELMNSIAGVTYGPAKTKLGQFKFEYDSDE--DAKEGTWE 179
           Q+E+Q M++ I   ++A ++ +L+   A          L Q +  YDSDE  D++ GTWE
Sbjct: 447 QQEMQQMYDMIMQHKRAMQDMQLLWEKA----------LQQHQHGYDSDEEVDSELGTWE 496

Query: 180 HRLRKEEMEATRDWADKLTEMGQGKHHIGDFLPPEELDRFMETFRALKEGREPDYSDYTT 359
           H+LR+ EM+ TR+WA++LT+MG+GKH IGDFLPP+EL++FMETF+ALKEGREPDYS+Y  
Sbjct: 497 HQLRRMEMDKTREWAEQLTQMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKE 556

Query: 360 FKITCENVGFKMLKKMGW 413
           FK+T EN+G++ML KMGW
Sbjct: 557 FKLTVENIGYQMLMKMGW 574
>sp|Q8IWZ8|SF04_HUMAN Splicing factor 4 (RNA-binding protein RBP)
          Length = 645

 Score =  151 bits (381), Expect = 6e-37
 Identities = 73/138 (52%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
 Frame = +3

Query: 9   QKELQGMHEFITAQQKA-KEQELMNSIAGVTYGPAKTKLGQFKFEYDSDE--DAKEGTWE 179
           Q+E+Q M++ I   ++A ++ +L+   A          + Q +  YDSDE  D++ GTWE
Sbjct: 448 QQEMQQMYDMIMQHKRAMQDMQLLWEKA----------VQQHQHGYDSDEEVDSELGTWE 497

Query: 180 HRLRKEEMEATRDWADKLTEMGQGKHHIGDFLPPEELDRFMETFRALKEGREPDYSDYTT 359
           H+LR+ EM+ TR+WA++LT+MG+GKH IGDFLPP+EL++FMETF+ALKEGREPDYS+Y  
Sbjct: 498 HQLRRMEMDKTREWAEQLTKMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKE 557

Query: 360 FKITCENVGFKMLKKMGW 413
           FK+T EN+G++ML KMGW
Sbjct: 558 FKLTVENIGYQMLMKMGW 575
>sp|Q8CH09|SFR14_MOUSE Putative splicing factor, arginine/serine-rich 14
            (Arginine/serine-rich splicing factor 14)
          Length = 1067

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 14/34 (41%), Positives = 25/34 (73%)
 Frame = +3

Query: 312  RALKEGREPDYSDYTTFKITCENVGFKMLKKMGW 413
            R + + ++P   +++  K+T +NVGF+ML+KMGW
Sbjct: 976  RPIAKKKKPKDMEFSQQKLTDKNVGFQMLQKMGW 1009
>sp|Q8IX01|SFR14_HUMAN Putative splicing factor, arginine/serine-rich 14
            (Arginine/serine-rich splicing factor 14)
          Length = 1082

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +3

Query: 312  RALKEGREPDYSDYTTFKITCENVGFKMLKKMGW 413
            R + + ++P   D+   K+T +N+GF+ML+KMGW
Sbjct: 991  RPMSKKKKPKDLDFAQQKLTDKNLGFQMLQKMGW 1024
>sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 (Kinesin-like protein osm-3)
          Length = 699

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
 Frame = +1

Query: 7   IRKSFKECMNSL-------QLNKKRRNKNL*IASQESHMDQRKQNWDNSNSNTIQMKMQK 165
           +R+ F+E MN L       Q +K    K+L   S  +  ++   N DN N      K+Q+
Sbjct: 380 LREEFEEAMNDLRGEYEREQTSKAELQKDL--ESLRADYERANANLDNLNPEEAAKKIQQ 437

Query: 166 --------REPGSTDFVKKKWKQLETGQINSQK 240
                    E G+T   +K+ KQL+  +  +QK
Sbjct: 438 LQDQFIGGEEAGNTQLKQKRMKQLKEAETKTQK 470
>sp|P14435|HA2F_MOUSE H-2 class II histocompatibility antigen, A-F alpha chain
          Length = 233

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +3

Query: 90  GVTYGPAKTKLGQFKFEYDSDE------DAKEGTWEHRLRKEEMEATRDWADKLTEMGQG 251
           G++   +   +GQ+ FE+D DE      D KE  W  RL +     + D    L E+  G
Sbjct: 13  GISVYQSPGDIGQYTFEFDGDEWFYVDLDKKETVW--RLPEFGQLTSFDPQGGLQEIATG 70

Query: 252 KHHIG 266
           KH++G
Sbjct: 71  KHNLG 75
>sp|Q6ND66|RIMM_RHOPA Probable 16S rRNA processing protein rimM
          Length = 176

 Score = 31.2 bits (69), Expect = 0.86
 Identities = 24/67 (35%), Positives = 32/67 (47%)
 Frame = +3

Query: 99  YGPAKTKLGQFKFEYDSDEDAKEGTWEHRLRKEEMEATRDWADKLTEMGQGKHHIGDFLP 278
           YGP  TK G  +FE  S  +AK     H +   +   TRD A++L   G   +   D LP
Sbjct: 36  YGPLVTKDGARQFEIASAREAK----SHLVVTLKGVTTRDEAERLN--GVELYVARDKLP 89

Query: 279 PEELDRF 299
           P E D +
Sbjct: 90  PTEADEY 96
>sp|Q03306|PKH3_YEAST Serine/threonine-protein kinase PKH3 (Pkb-activating kinase homolog
           3)
          Length = 898

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 160 ASSSESYSNLNCPNFVFAGPYVTPAMLFISSCSF 59
           + S+ S  N NC +FV    YV+P +L  + C +
Sbjct: 176 SDSNGSKDNQNCASFVGTAEYVSPELLLYNQCGY 209
>sp|Q14678|ANR15_HUMAN Ankyrin repeat domain protein 15 (Kidney ankyrin repeat-containing
           protein)
          Length = 1352

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 26/71 (36%), Positives = 32/71 (45%)
 Frame = -3

Query: 304 SIKRSNSSGGRKSPMWCFPCPISVSLSAQSRVASISSLRSLCSQVPSFASSSESYSNLNC 125
           +IKR N    RK  +   PCP   + S Q  + +  S  SL        SSS S  N  C
Sbjct: 57  TIKRLNIQKRRKPSV---PCPEPRTTSGQQGIWT--STESL--------SSSNSDDNKQC 103

Query: 124 PNFVFAGPYVT 92
           PNF+ A   VT
Sbjct: 104 PNFLIARSQVT 114
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,393,198
Number of Sequences: 369166
Number of extensions: 944925
Number of successful extensions: 3392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3386
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)