Planaria EST Database


DrC_02693

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02693
         (847 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PHI9|RAB4A_BRARE  Ras-related protein Rab-4A                 247   3e-65
sp|P20338|RAB4A_HUMAN  Ras-related protein Rab-4A                 244   2e-64
sp|P56371|RAB4A_MOUSE  Ras-related protein Rab-4A                 241   2e-63
sp|P05714|RAB4A_RAT  Ras-related protein Rab-4A                   239   7e-63
sp|Q68EK7|RAB4B_BRARE  Ras-related protein Rab-4B                 233   4e-61
sp|P61018|RAB4B_HUMAN  Ras-related protein Rab-4B >gi|465776...   233   7e-61
sp|P51146|RAB4B_RAT  Ras-related protein Rab-4B >gi|46577105...   232   9e-61
sp|Q91V41|RAB14_MOUSE  Ras-related protein Rab-14                 211   2e-54
sp|P61107|RAB14_RAT  Ras-related protein Rab-14 >gi|46577643...   211   2e-54
sp|P36410|RAB4_DICDI  Ras-related protein Rab4                    202   7e-52
>sp|Q6PHI9|RAB4A_BRARE Ras-related protein Rab-4A
          Length = 213

 Score =  247 bits (631), Expect = 3e-65
 Identities = 128/207 (61%), Positives = 164/207 (79%), Gaps = 4/207 (1%)
 Frame = +2

Query: 116 MTDIYDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQ 295
           M++ YD+LFKFL+IGN+G GKSC+L+QFIE++F+ DS+HTIGVEF SKIIS+ N+ VKLQ
Sbjct: 1   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQ 60

Query: 296 IWDTAGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVG 475
           IWDTAGQERFRSVTRSYYR AAGALLVYD+T R+++  L NWL D R L+ + I+IIL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120

Query: 476 NKIDKSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVETVFSS 655
           NK D  + +R+V+F+E ++FAQENELMF+ETSALTGENV +AFV  AR+IL+ +E   S 
Sbjct: 121 NKKD-LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE---SG 176

Query: 656 GLD----NSADEFRSADVRRPYLRSPR 724
            LD     S  ++  A +R+  LRSPR
Sbjct: 177 ELDPERMGSGIQYGDAALRQ--LRSPR 201
>sp|P20338|RAB4A_HUMAN Ras-related protein Rab-4A
          Length = 213

 Score =  244 bits (623), Expect = 2e-64
 Identities = 126/207 (60%), Positives = 163/207 (78%), Gaps = 4/207 (1%)
 Frame = +2

Query: 116 MTDIYDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQ 295
           M++ YD+LFKFL+IGN+G GKSC+L+QFIE++F+ DS+HTIGVEF SKII++  + VKLQ
Sbjct: 1   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 60

Query: 296 IWDTAGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVG 475
           IWDTAGQERFRSVTRSYYR AAGALLVYD+T R+++  L NWL D R L+ + I+IIL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120

Query: 476 NKIDKSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVETVFSS 655
           NK D  + +R+V+F+E ++FAQENELMF+ETSALTGENV +AFV  AR+IL+ +E   S 
Sbjct: 121 NKKD-LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE---SG 176

Query: 656 GLD----NSADEFRSADVRRPYLRSPR 724
            LD     S  ++  A +R+  LRSPR
Sbjct: 177 ELDPERMGSGIQYGDAALRQ--LRSPR 201
>sp|P56371|RAB4A_MOUSE Ras-related protein Rab-4A
          Length = 213

 Score =  241 bits (615), Expect = 2e-63
 Identities = 123/207 (59%), Positives = 163/207 (78%), Gaps = 4/207 (1%)
 Frame = +2

Query: 116 MTDIYDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQ 295
           M++ YD+LFKFL+IGN+G GKSC+L+QFIE++F+ DS+HTIG+EF SKII++  + VKLQ
Sbjct: 1   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQ 60

Query: 296 IWDTAGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVG 475
           IWDTAGQERFRSVTRSYYR AAGALLVYD+T R+++  L NWL D R L+ + I++IL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCG 120

Query: 476 NKIDKSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVETVFSS 655
           NK D  + +R+V+F+E ++FAQENELMF+ETSALTGENV +AF+  AR+IL+ +E   S 
Sbjct: 121 NKKD-LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIE---SG 176

Query: 656 GLD----NSADEFRSADVRRPYLRSPR 724
            LD     S  ++  A +R+  LRSPR
Sbjct: 177 ELDPERMGSGIQYGDAALRQ--LRSPR 201
>sp|P05714|RAB4A_RAT Ras-related protein Rab-4A
          Length = 213

 Score =  239 bits (610), Expect = 7e-63
 Identities = 123/207 (59%), Positives = 161/207 (77%), Gaps = 4/207 (1%)
 Frame = +2

Query: 116 MTDIYDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQ 295
           M++ YD+LFKFL+IGN+G GKSC+L+QFIE++F+ DS+HTIGVEF  KII++  + VKLQ
Sbjct: 1   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGQKIINVGGKYVKLQ 60

Query: 296 IWDTAGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVG 475
           IWDTAGQERFRSVT SYYR AAGALLVYD+T R+++  L NWL D R L+ + I+IIL G
Sbjct: 61  IWDTAGQERFRSVTTSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120

Query: 476 NKIDKSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVETVFSS 655
           NK D  + +R+V+F+E ++FAQENELMF+ETSALTGENV +AF+  AR+IL+ +E   S 
Sbjct: 121 NKKD-LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIE---SG 176

Query: 656 GLD----NSADEFRSADVRRPYLRSPR 724
            LD     S  ++  A +R+  LRSPR
Sbjct: 177 ELDPERMGSGIQYGDAALRQ--LRSPR 201
>sp|Q68EK7|RAB4B_BRARE Ras-related protein Rab-4B
          Length = 213

 Score =  233 bits (595), Expect = 4e-61
 Identities = 119/209 (56%), Positives = 159/209 (76%), Gaps = 4/209 (1%)
 Frame = +2

Query: 116 MTDIYDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQ 295
           M++ YD+LFKFL+IG++G GKSC+L+QFIE +F+ DS+HTIGVEF S+++++  + VKLQ
Sbjct: 1   MSETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 60

Query: 296 IWDTAGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVG 475
           IWDTAGQERFRSVTRSYYR AAGALLVYD+T R+++  L NWL D R L+   I+IIL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCG 120

Query: 476 NKIDKSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVETVFSS 655
           NK D  + +R+V+F+E ++FAQENELMF+ETSALTGENV +AF+  AR I + +E   S 
Sbjct: 121 NKKD-LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSIPNKIE---SG 176

Query: 656 GLD----NSADEFRSADVRRPYLRSPRDS 730
            LD     S  ++  A +R+  +R PR S
Sbjct: 177 ELDPERMGSGIQYGDASLRQ--IRQPRGS 203
>sp|P61018|RAB4B_HUMAN Ras-related protein Rab-4B
 sp|P61017|RAB4B_CANFA Ras-related protein Rab-4B
          Length = 213

 Score =  233 bits (593), Expect = 7e-61
 Identities = 118/209 (56%), Positives = 159/209 (76%), Gaps = 4/209 (1%)
 Frame = +2

Query: 116 MTDIYDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQ 295
           M + YD+LFKFL+IG++G GKSC+L+QFIE +F+ DS+HTIGVEF S+++++  + VKLQ
Sbjct: 1   MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 60

Query: 296 IWDTAGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVG 475
           IWDTAGQERFRSVTRSYYR AAGALLVYD+T R+++ +L  WL D R L+   I++IL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 120

Query: 476 NKIDKSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVETVFSS 655
           NK D  + ER+V+F+E ++FAQENELMF+ETSALTGENV +AF+  AR IL+ ++   S 
Sbjct: 121 NKKD-LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKID---SG 176

Query: 656 GLD----NSADEFRSADVRRPYLRSPRDS 730
            LD     S  ++  A +R+  LR PR +
Sbjct: 177 ELDPERMGSGIQYGDASLRQ--LRQPRSA 203
>sp|P51146|RAB4B_RAT Ras-related protein Rab-4B
 sp|Q91ZR1|RAB4B_MOUSE Ras-related protein Rab-4B
          Length = 213

 Score =  232 bits (592), Expect = 9e-61
 Identities = 116/207 (56%), Positives = 155/207 (74%), Gaps = 2/207 (0%)
 Frame = +2

Query: 116 MTDIYDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQ 295
           M + YD+LFKFL+IG++G GKSC+L+QFIE +F+ DS+HTIGVEF S+++++  + VKLQ
Sbjct: 1   MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 60

Query: 296 IWDTAGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVG 475
           IWDTAGQERFRSVTRSYYR AAGALLVYD+T R+++ +L  WL D R L+   I++IL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 120

Query: 476 NKIDKSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVETVFSS 655
           NK D  + ER+V+F+E ++FAQENELMF+ETSALTGENV +AF+  AR IL+ ++   S 
Sbjct: 121 NKKD-LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKID---SG 176

Query: 656 GLD--NSADEFRSADVRRPYLRSPRDS 730
            LD        +  D+    LR PR +
Sbjct: 177 ELDPERMGSGIQYGDISLRQLRQPRSA 203
>sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14
          Length = 215

 Score =  211 bits (538), Expect = 2e-54
 Identities = 101/184 (54%), Positives = 140/184 (76%)
 Frame = +2

Query: 128 YDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQIWDT 307
           Y Y+FK+++IG+ GVGKSC+L+QF E++F +D  HTIGVEF ++II ++ +K+KLQIWDT
Sbjct: 8   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 67

Query: 308 AGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVGNKID 487
           AGQERFR+VTRSYYR AAGAL+VYD+T R ++ +L++WL D R L+    +IIL+GNK D
Sbjct: 68  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 127

Query: 488 KSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVETVFSSGLDN 667
             E +R V++ E  QFA+EN L+F+E SA TGENV DAF+  A++I  N++      LD 
Sbjct: 128 -LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ---DGSLDL 183

Query: 668 SADE 679
           +A E
Sbjct: 184 NAAE 187
>sp|P61107|RAB14_RAT Ras-related protein Rab-14
 sp|P61106|RAB14_HUMAN Ras-related protein Rab-14
          Length = 215

 Score =  211 bits (538), Expect = 2e-54
 Identities = 101/184 (54%), Positives = 140/184 (76%)
 Frame = +2

Query: 128 YDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQIWDT 307
           Y Y+FK+++IG+ GVGKSC+L+QF E++F +D  HTIGVEF ++II ++ +K+KLQIWDT
Sbjct: 8   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 67

Query: 308 AGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVGNKID 487
           AGQERFR+VTRSYYR AAGAL+VYD+T R ++ +L++WL D R L+    +IIL+GNK D
Sbjct: 68  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 127

Query: 488 KSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVETVFSSGLDN 667
             E +R V++ E  QFA+EN L+F+E SA TGENV DAF+  A++I  N++      LD 
Sbjct: 128 -LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ---DGSLDL 183

Query: 668 SADE 679
           +A E
Sbjct: 184 NAAE 187
>sp|P36410|RAB4_DICDI Ras-related protein Rab4
          Length = 205

 Score =  202 bits (515), Expect = 7e-52
 Identities = 95/171 (55%), Positives = 133/171 (77%)
 Frame = +2

Query: 128 YDYLFKFLLIGNSGVGKSCVLNQFIEEQFRSDSSHTIGVEFASKIISIANRKVKLQIWDT 307
           Y+Y+FK+++IG+ GVGKSC+L+QF E +F  DS HTIGVEF ++I+ + N+K+KLQIWDT
Sbjct: 5   YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDT 64

Query: 308 AGQERFRSVTRSYYRKAAGALLVYDVTDRDSFTNLNNWLIDIRQLSGEGIIIILVGNKID 487
           AGQERFR+VTRSYYR AAGALLVYD+T R ++ +L  WL D R L+    +I+L+GNK D
Sbjct: 65  AGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKD 124

Query: 488 KSEEERQVSFIEGTQFAQENELMFIETSALTGENVSDAFVNVARRILHNVE 640
             E +R V++ E + FA++N L+F+E+SA TGENV +AF+  A+ I  +V+
Sbjct: 125 -LEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQ 174
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,103,092
Number of Sequences: 369166
Number of extensions: 1465536
Number of successful extensions: 5148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4666
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)