Planaria EST Database


DrC_02691

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02691
         (571 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HBW9|ELTD1_HUMAN  EGF, latrophilin and seven transmembr...    37   0.045
sp|Q9ESC1|ELTD1_RAT  EGF, latrophilin and seven transmembran...    37   0.045
sp|Q923X1|ELTD1_MOUSE  EGF, latrophilin seven transmembrane ...    37   0.045
sp|Q9UHX3|EMR2_HUMAN  EGF-like module containing mucin-like ...    34   0.29 
sp|Q8IZF5|GP113_HUMAN  Probable G-protein coupled receptor 1...    31   1.9  
sp|P29254|PSAA_SYNY3  Photosystem I P700 chlorophyll a apopr...    31   2.5  
sp|P58309|PSAA_AMPCA  Photosystem I P700 chlorophyll a apopr...    30   3.2  
sp|Q9MTQ4|PSAA_AMPOP  Photosystem I P700 chlorophyll a apopr...    30   4.2  
sp|P57540|CYOE_BUCAI  Protoheme IX farnesyltransferase (Heme...    30   4.2  
sp|O97827|LPHN3_BOVIN  Latrophilin-3 precursor                     30   4.2  
>sp|Q9HBW9|ELTD1_HUMAN EGF, latrophilin and seven transmembrane domain containing protein
           1 precursor (EGF-TM7-latrophilin-related protein) (ETL
           protein)
          Length = 690

 Score = 36.6 bits (83), Expect = 0.045
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 13  YGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVFR 141
           YG    CWLS   + I+   GPA     ++L++  V I+ VFR
Sbjct: 556 YGTTKVCWLSTENNFIWSFIGPACLIILVNLLAFGVIIYKVFR 598
>sp|Q9ESC1|ELTD1_RAT EGF, latrophilin and seven transmembrane domain containing protein
           1 precursor (EGF-TM7-latrophilin-related protein) (ETL
           protein)
          Length = 738

 Score = 36.6 bits (83), Expect = 0.045
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 13  YGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVFR 141
           YG    CWLS   + I+   GPA     ++L++  V I+ VFR
Sbjct: 604 YGTTKVCWLSTENNFIWSFIGPACLIILVNLLAFGVIIYKVFR 646
>sp|Q923X1|ELTD1_MOUSE EGF, latrophilin seven transmembrane domain containing protein 1
           precursor
          Length = 739

 Score = 36.6 bits (83), Expect = 0.045
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 13  YGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVFR 141
           YG    CWLS   + I+   GPA     ++L++  V I+ VFR
Sbjct: 605 YGTTKVCWLSTENNFIWSFIGPACLIILVNLLAFGVIIYKVFR 647
>sp|Q9UHX3|EMR2_HUMAN EGF-like module containing mucin-like hormone receptor-like 2
           precursor (EGF-like module EMR2) (CD312 antigen)
          Length = 823

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 4   PVTYGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIF 129
           P  YG    CWL      I+G  GP  A F+++L+   V ++
Sbjct: 667 PHLYGTPSRCWLQPEKGFIWGFLGPVCAIFSVNLVLFLVTLW 708
>sp|Q8IZF5|GP113_HUMAN Probable G-protein coupled receptor 113 precursor (G-protein coupled
            receptor PGR23)
          Length = 1079

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
 Frame = +1

Query: 13   YGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVFRXXXXXXXXXXXXXXXXX 192
            Y R   CWL G    +Y   GP +A   ++ + L +A+  + R                 
Sbjct: 911  YLREGECWLDGKGGALYTFVGPVLAIIGVNGLVLAMAMLKLLRPSLSEGPPAEKRQALLG 970

Query: 193  XXXXLFFSIKLGILTGVTLGMMQISILFDWRII-NMIFSGINSSLGCLICILFNC--NSR 363
                L     L  + G+T G+   ++L +   + + IF+ +N+  G  I +LF C  + +
Sbjct: 971  VIKALLI---LTPIFGLTWGLGLATLLEEVSTVPHYIFTILNTLQGVFI-LLFGCLMDRK 1026

Query: 364  VWNLYNKKF 390
            +     K+F
Sbjct: 1027 IQEALRKRF 1035
>sp|P29254|PSAA_SYNY3 Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)
          Length = 751

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
 Frame = +3

Query: 48  FLSNLWSYWTSNSNIYHFIN*FDSCYIWSVSFCQIFWPSGSIKFIK-S*FKYRFIFLNQ- 221
           FL   W Y + +  I+HF     S    +VS      P GS+  +    F    I +N  
Sbjct: 592 FLGLFWMYNSLSIVIFHFSWKMQSDVWGTVS------PDGSVTHVTLGNFAQSAITINGW 645

Query: 222 IRNFNWSHARNDANKYSV*LENYQYDFQWNQF*FRMSHLYI 344
           +R+F W+ A N  N Y   L  Y   F    F F  S +++
Sbjct: 646 LRDFLWAQAANVINSYGSALSAYGIMFLAGHFVFAFSLMFL 686
>sp|P58309|PSAA_AMPCA Photosystem I P700 chlorophyll a apoprotein A1 (PsaA) (PSI-A)
          Length = 678

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +3

Query: 48  FLSNLWSYWTSNSNIYHFIN*FDSCYIWSVSFCQIFWPSGSIKFIKS*FKYRFIFLNQ-I 224
           FL   W Y + +  I+HF   + S  + S+         GSI+ + S F+   I  N  +
Sbjct: 518 FLGLFWMYNSISVVIFHFFWEYQS-NLASIKASA----GGSIRALASDFELNSINTNGWL 572

Query: 225 RNFNWSHARNDANKYSV*LENYQYDFQWNQF*FRMSHLYI 344
           RNF WS A      Y   L  Y   F  + F + +S +++
Sbjct: 573 RNFLWSGAAQVIQSYGSPLAAYGLTFPASHFVWALSLMFL 612
>sp|Q9MTQ4|PSAA_AMPOP Photosystem I P700 chlorophyll a apoprotein A1 (PsaA) (PSI-A)
          Length = 671

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +3

Query: 48  FLSNLWSYWTSNSNIYHFIN*FDSCYIWSVSFCQIFWPSGSIKFIKS*FKYRFIFLNQ-I 224
           FL   W Y + +  I+HF   + S  + S+         GSI+ + S F+   I  N  +
Sbjct: 511 FLGLFWMYNSISVVIFHFFWEYQS-NLASIKASA----GGSIRALASDFELNSINTNGWL 565

Query: 225 RNFNWSHARNDANKYSV*LENYQYDFQWNQF*FRMSHLYI 344
           RNF WS A      Y   L  Y   F  + F + +S +++
Sbjct: 566 RNFLWSGAAQVIQSYGSPLAAYGLTFLASHFVWALSLMFL 605
>sp|P57540|CYOE_BUCAI Protoheme IX farnesyltransferase (Heme O synthase)
          Length = 285

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 46  NFSVIYGVTGPAIATFTISLISLTVAIFGVF 138
           NF++  GV G +I    ++ IS+++A+FG F
Sbjct: 88  NFAIFLGVLGLSILGCLVNFISMSLAVFGFF 118
>sp|O97827|LPHN3_BOVIN Latrophilin-3 precursor
          Length = 1580

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 10   TYGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVF 138
            +YG    CWL  +   I+   GPA     +++I L +A++ +F
Sbjct: 1073 SYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMF 1115
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,123,982
Number of Sequences: 369166
Number of extensions: 1049729
Number of successful extensions: 2406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2405
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)