Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_A02
(571 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9HBW9|ELTD1_HUMAN EGF, latrophilin and seven transmembr... 37 0.045
sp|Q9ESC1|ELTD1_RAT EGF, latrophilin and seven transmembran... 37 0.045
sp|Q923X1|ELTD1_MOUSE EGF, latrophilin seven transmembrane ... 37 0.045
sp|Q9UHX3|EMR2_HUMAN EGF-like module containing mucin-like ... 34 0.29
sp|Q8IZF5|GP113_HUMAN Probable G-protein coupled receptor 1... 31 1.9
sp|P29254|PSAA_SYNY3 Photosystem I P700 chlorophyll a apopr... 31 2.5
sp|P58309|PSAA_AMPCA Photosystem I P700 chlorophyll a apopr... 30 3.2
sp|Q9MTQ4|PSAA_AMPOP Photosystem I P700 chlorophyll a apopr... 30 4.2
sp|P57540|CYOE_BUCAI Protoheme IX farnesyltransferase (Heme... 30 4.2
sp|O97827|LPHN3_BOVIN Latrophilin-3 precursor 30 4.2
>sp|Q9HBW9|ELTD1_HUMAN EGF, latrophilin and seven transmembrane domain containing protein
1 precursor (EGF-TM7-latrophilin-related protein) (ETL
protein)
Length = 690
Score = 36.6 bits (83), Expect = 0.045
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 13 YGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVFR 141
YG CWLS + I+ GPA ++L++ V I+ VFR
Sbjct: 556 YGTTKVCWLSTENNFIWSFIGPACLIILVNLLAFGVIIYKVFR 598
>sp|Q9ESC1|ELTD1_RAT EGF, latrophilin and seven transmembrane domain containing protein
1 precursor (EGF-TM7-latrophilin-related protein) (ETL
protein)
Length = 738
Score = 36.6 bits (83), Expect = 0.045
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 13 YGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVFR 141
YG CWLS + I+ GPA ++L++ V I+ VFR
Sbjct: 604 YGTTKVCWLSTENNFIWSFIGPACLIILVNLLAFGVIIYKVFR 646
>sp|Q923X1|ELTD1_MOUSE EGF, latrophilin seven transmembrane domain containing protein 1
precursor
Length = 739
Score = 36.6 bits (83), Expect = 0.045
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 13 YGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVFR 141
YG CWLS + I+ GPA ++L++ V I+ VFR
Sbjct: 605 YGTTKVCWLSTENNFIWSFIGPACLIILVNLLAFGVIIYKVFR 647
>sp|Q9UHX3|EMR2_HUMAN EGF-like module containing mucin-like hormone receptor-like 2
precursor (EGF-like module EMR2) (CD312 antigen)
Length = 823
Score = 33.9 bits (76), Expect = 0.29
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 4 PVTYGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIF 129
P YG CWL I+G GP A F+++L+ V ++
Sbjct: 667 PHLYGTPSRCWLQPEKGFIWGFLGPVCAIFSVNLVLFLVTLW 708
>sp|Q8IZF5|GP113_HUMAN Probable G-protein coupled receptor 113 precursor (G-protein coupled
receptor PGR23)
Length = 1079
Score = 31.2 bits (69), Expect = 1.9
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Frame = +1
Query: 13 YGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVFRXXXXXXXXXXXXXXXXX 192
Y R CWL G +Y GP +A ++ + L +A+ + R
Sbjct: 911 YLREGECWLDGKGGALYTFVGPVLAIIGVNGLVLAMAMLKLLRPSLSEGPPAEKRQALLG 970
Query: 193 XXXXLFFSIKLGILTGVTLGMMQISILFDWRII-NMIFSGINSSLGCLICILFNC--NSR 363
L L + G+T G+ ++L + + + IF+ +N+ G I +LF C + +
Sbjct: 971 VIKALLI---LTPIFGLTWGLGLATLLEEVSTVPHYIFTILNTLQGVFI-LLFGCLMDRK 1026
Query: 364 VWNLYNKKF 390
+ K+F
Sbjct: 1027 IQEALRKRF 1035
>sp|P29254|PSAA_SYNY3 Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)
Length = 751
Score = 30.8 bits (68), Expect = 2.5
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +3
Query: 48 FLSNLWSYWTSNSNIYHFIN*FDSCYIWSVSFCQIFWPSGSIKFIK-S*FKYRFIFLNQ- 221
FL W Y + + I+HF S +VS P GS+ + F I +N
Sbjct: 592 FLGLFWMYNSLSIVIFHFSWKMQSDVWGTVS------PDGSVTHVTLGNFAQSAITINGW 645
Query: 222 IRNFNWSHARNDANKYSV*LENYQYDFQWNQF*FRMSHLYI 344
+R+F W+ A N N Y L Y F F F S +++
Sbjct: 646 LRDFLWAQAANVINSYGSALSAYGIMFLAGHFVFAFSLMFL 686
>sp|P58309|PSAA_AMPCA Photosystem I P700 chlorophyll a apoprotein A1 (PsaA) (PSI-A)
Length = 678
Score = 30.4 bits (67), Expect = 3.2
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = +3
Query: 48 FLSNLWSYWTSNSNIYHFIN*FDSCYIWSVSFCQIFWPSGSIKFIKS*FKYRFIFLNQ-I 224
FL W Y + + I+HF + S + S+ GSI+ + S F+ I N +
Sbjct: 518 FLGLFWMYNSISVVIFHFFWEYQS-NLASIKASA----GGSIRALASDFELNSINTNGWL 572
Query: 225 RNFNWSHARNDANKYSV*LENYQYDFQWNQF*FRMSHLYI 344
RNF WS A Y L Y F + F + +S +++
Sbjct: 573 RNFLWSGAAQVIQSYGSPLAAYGLTFPASHFVWALSLMFL 612
>sp|Q9MTQ4|PSAA_AMPOP Photosystem I P700 chlorophyll a apoprotein A1 (PsaA) (PSI-A)
Length = 671
Score = 30.0 bits (66), Expect = 4.2
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = +3
Query: 48 FLSNLWSYWTSNSNIYHFIN*FDSCYIWSVSFCQIFWPSGSIKFIKS*FKYRFIFLNQ-I 224
FL W Y + + I+HF + S + S+ GSI+ + S F+ I N +
Sbjct: 511 FLGLFWMYNSISVVIFHFFWEYQS-NLASIKASA----GGSIRALASDFELNSINTNGWL 565
Query: 225 RNFNWSHARNDANKYSV*LENYQYDFQWNQF*FRMSHLYI 344
RNF WS A Y L Y F + F + +S +++
Sbjct: 566 RNFLWSGAAQVIQSYGSPLAAYGLTFLASHFVWALSLMFL 605
>sp|P57540|CYOE_BUCAI Protoheme IX farnesyltransferase (Heme O synthase)
Length = 285
Score = 30.0 bits (66), Expect = 4.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 46 NFSVIYGVTGPAIATFTISLISLTVAIFGVF 138
NF++ GV G +I ++ IS+++A+FG F
Sbjct: 88 NFAIFLGVLGLSILGCLVNFISMSLAVFGFF 118
>sp|O97827|LPHN3_BOVIN Latrophilin-3 precursor
Length = 1580
Score = 30.0 bits (66), Expect = 4.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 10 TYGRVPTCWLSGNFSVIYGVTGPAIATFTISLISLTVAIFGVF 138
+YG CWL + I+ GPA +++I L +A++ +F
Sbjct: 1073 SYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMF 1115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,123,982
Number of Sequences: 369166
Number of extensions: 1049729
Number of successful extensions: 2406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2405
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)