Planaria EST Database


DrC_02686

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02686
         (462 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51534|SHE4_YEAST  Protein SHE4                                 32   0.90 
sp|P38041|BOB1_YEAST  Protein BOB1 (BEM1-binding protein)          31   1.2  
sp|O13759|CSX1_SCHPO  RNA-binding post-transcriptional regul...    31   1.2  
sp|O43493|TGON2_HUMAN  Trans-Golgi network integral membrane...    30   2.6  
sp|P25386|USO1_YEAST  Intracellular protein transport protei...    29   4.5  
sp|P12036|NFH_HUMAN  Neurofilament triplet H protein (200 kD...    29   4.5  
sp|O01761|UNC89_CAEEL  Muscle M-line assembly protein unc-89...    29   4.5  
sp|Q4A0V8|UAFA_STAS1  Uro-adherence factor A precursor             29   4.5  
sp|P11654|PO210_RAT  Nuclear pore membrane glycoprotein 210 ...    29   4.5  
sp|P40357|SEC9_YEAST  Protein transport protein SEC9               29   5.8  
>sp|P51534|SHE4_YEAST Protein SHE4
          Length = 789

 Score = 31.6 bits (70), Expect = 0.90
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 4   TWNATKNVVHSPTNVKSLAEIQVEESEKINQEKIPNDNEAVISTEKSSKKEPSISLKSY 180
           TW+ TK       N+K L+EI +    +    KI N NE+ +  E+  K E S+   +Y
Sbjct: 316 TWSFTKLTC---INLKQLSEIFINAISRRIMPKIENVNESAVKLEEVPKVEMSVEALAY 371
>sp|P38041|BOB1_YEAST Protein BOB1 (BEM1-binding protein)
          Length = 980

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 19  KNVVHSPTNVKSLAEIQVEESEKINQEKIPNDNEAVISTEKSSKKEPSISLKSYPVAQKT 198
           + V  SPT V  ++  Q+++ + + QEK  N+      +  SS  + ++S +S     K+
Sbjct: 144 QEVSKSPTRVPEVSTPQLQDEQTLIQEKTRNEENTTHDSLFSSTADLNLSSESLKNISKS 203

Query: 199 N-NTKSL 216
           N +TKSL
Sbjct: 204 NISTKSL 210
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
          Length = 632

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +1

Query: 31  HSPTNVKSLAEIQVEESEK-----INQEKIPNDNEAVISTEKSSKKEPSISLKSYPVAQK 195
           H+   V +L++ Q + S++     ++  +I   N++VI     S      SLKS PV+ +
Sbjct: 368 HNTLPVSALSQSQSQVSDEGFDRTLSANQIFGMNQSVIGANSGSSNSSGSSLKSAPVSPR 427

Query: 196 TNNTKSLL 219
           T   +SLL
Sbjct: 428 TAAAQSLL 435
>sp|O43493|TGON2_HUMAN Trans-Golgi network integral membrane protein 2 precursor
           (Trans-Golgi network protein TGN51) (TGN46) (TGN48)
           (TGN38 homolog)
          Length = 480

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
 Frame = +1

Query: 43  NVKSLAEIQVEESEKINQEKIP-NDNEAVISTEKSSKKEPSISLKSYPVAQ--KTNNTKS 213
           NV +   + +  +E + QE+     +   +ST  S  + P  S KS+P  Q  K + +KS
Sbjct: 11  NVAAAGAVPLLATESVKQEEAGVRPSAGNVSTHPSLSQRPGGSTKSHPEPQTPKDSPSKS 70

Query: 214 LLEIQXXXXXXXXXXXXLENISKINETSTLNNPDKAETPV-SWKKTPLAVTTSVPSTTKS 390
             E Q                +K  + S+  +  +A+TP  S  K+     T+  ST+KS
Sbjct: 71  SAEAQTPEDTPNKSGGE----AKTLKDSSNKSGAEAQTPKGSTSKSGSEAQTTKDSTSKS 126

Query: 391 LLEIQAEEALKEKRYKELRT 450
             E+Q  +    K   E +T
Sbjct: 127 HPELQTPKDSTGKSGAEAQT 146
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
          Length = 1790

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 35/134 (26%), Positives = 53/134 (39%)
 Frame = +1

Query: 61   EIQVEESEKINQEKIPNDNEAVISTEKSSKKEPSISLKSYPVAQKTNNTKSLLEIQXXXX 240
            E Q+   E+   E+I   N+ + ST++ ++   SI  K+  +  +    KS  E Q    
Sbjct: 1165 EEQIANKERQYNEEISQLNDEITSTQQENE---SIKKKNDELEGEVKAMKSTSEEQSNLK 1221

Query: 241  XXXXXXXXLENISKINETSTLNNPDKAETPVSWKKTPLAVTTSVPSTTKSLLEIQAEEAL 420
                    L+    I E    N  ++A    S K        SV S T  + E+Q E   
Sbjct: 1222 KSEIDALNLQ----IKELKKKNETNEASLLESIK--------SVESETVKIKELQDECNF 1269

Query: 421  KEKRYKELRTIAKS 462
            KEK   EL    K+
Sbjct: 1270 KEKEVSELEDKLKA 1283
>sp|P12036|NFH_HUMAN Neurofilament triplet H protein (200 kDa neurofilament protein)
            (Neurofilament heavy polypeptide) (NF-H)
          Length = 1026

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 30/145 (20%), Positives = 57/145 (39%)
 Frame = +1

Query: 19   KNVVHSPTNVKSLAEIQVEESEKINQEKIPNDNEAVISTEKSSKKEPSISLKSYPVAQKT 198
            K    SP  VKS  + +    E+    +     E   S EK   K P    KS   A+  
Sbjct: 623  KEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKAKSPEKEEAKSPE-KAKSPVKAEAK 681

Query: 199  NNTKSLLEIQXXXXXXXXXXXXLENISKINETSTLNNPDKAETPVSWKKTPLAVTTSVPS 378
            +  K+   ++            ++  +K  E +     ++A++P    K+P+      P 
Sbjct: 682  SPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEK-AKSPVKEEAKTPE 740

Query: 379  TTKSLLEIQAEEALKEKRYKELRTI 453
              KS ++ +A+   K K  ++ +T+
Sbjct: 741  KAKSPVKEEAKSPEKAKSPEKAKTL 765
>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 (Uncoordinated protein 89)
          Length = 8081

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 2/126 (1%)
 Frame = +1

Query: 16   TKNVVHSPTNVKSLAEIQVEESEKINQEKIPN--DNEAVISTEKSSKKEPSISLKSYPVA 189
            ++N V SPT  +   E  V E  K  +EK P   D++    T+K    E S    +  V 
Sbjct: 1594 SENEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKKEKSPEKS---ATEDVK 1650

Query: 190  QKTNNTKSLLEIQXXXXXXXXXXXXLENISKINETSTLNNPDKAETPVSWKKTPLAVTTS 369
              T   KS  +++              + +K   + T    D+ ++P   +K+P  V   
Sbjct: 1651 SPTKKEKSPEKVEEKP----------TSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEK 1700

Query: 370  VPSTTK 387
              S TK
Sbjct: 1701 PASPTK 1706

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
 Frame = +1

Query: 34   SPTNVKSLAEIQVEESEK--INQEKIPNDNEAVISTEKSSKKEPSISLKSYPVAQKTNNT 207
            SPT      E  + E  K  + +EK P   E        +KKE S    + P  +  N  
Sbjct: 1541 SPTKKDKSPEKSITEEIKSPVKKEKSPEKVEE--KPASPTKKEKSPEKPASPTKKSENEV 1598

Query: 208  KSLLEIQXXXXXXXXXXXXLENISKINETSTLNNPDKAETPVSWKKTP-LAVTTSVPSTT 384
            KS  + +            +E +    E S     DK ++P   +K+P  + T  V S T
Sbjct: 1599 KSPTKKE-----KSPEKSVVEELKSPKEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPT 1653

Query: 385  KSLLEIQAEEALKEK 429
            K   + ++ E ++EK
Sbjct: 1654 K---KEKSPEKVEEK 1665
>sp|Q4A0V8|UAFA_STAS1 Uro-adherence factor A precursor
          Length = 2316

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
 Frame = +1

Query: 49   KSLAEIQ-VEESEKINQEKIPNDNEAVISTEKSSKKEPSISLKSYPVAQKTNNTKSLLEI 225
            +SL+E + + ESE ++  +  +D+E++ ++E  S  E   + +S   ++  + ++SL E 
Sbjct: 953  ESLSESESLSESESLSASESLSDSESLSASESLSASESLSASESLSASESLSASESLSES 1012

Query: 226  QXXXXXXXXXXXXLENISKINETSTLNNPDKAETPVSWKKTPLAVTTSVPSTTKSLLE-- 399
            +            L     ++E+ +L+  +      S   +    T+   ST++SL E  
Sbjct: 1013 E-----SLSDSESLSESESLSESESLSTSESLSASESISASESLSTSESLSTSESLSESE 1067

Query: 400  -IQAEEALKE 426
             +   E+L E
Sbjct: 1068 SLSESESLSE 1077
>sp|P11654|PO210_RAT Nuclear pore membrane glycoprotein 210 precursor (Nuclear pore
            membrane glycoprotein 210)
          Length = 1886

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 313  DKAETPVSWKKTPLAVTTSVPSTTKSLLEIQAE 411
            DK    ++ KKT LAVT S+PS+  S+ ++ AE
Sbjct: 1652 DKQLKHLNMKKTSLAVTASMPSSRTSVEKVGAE 1684
>sp|P40357|SEC9_YEAST Protein transport protein SEC9
          Length = 651

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 7/152 (4%)
 Frame = +1

Query: 7   WNATKNVVHSPTNVKSLAEIQVEESEKINQEK---IPNDNEAVISTEKSSKKEPSISLKS 177
           +NAT N        K+  EIQ EE  +  QE+   +    + +  T++SS      +LK 
Sbjct: 391 FNATNNQYGDQRGYKTFEEIQKEEEARQQQEEDEAVDEIKQEIKFTKQSSVASTRNTLKM 450

Query: 178 YPVAQKTN-NTKSLLEIQXXXXXXXXXXXXLENISKINETSTLNNPDKAETPVSWKK--- 345
              A++   NT  +L  Q            L N+    +   + N    E     KK   
Sbjct: 451 AQDAERAGMNTLGMLGHQ---------SEQLNNVEGNLDLMKVQNKVADEKVAELKKLNR 501

Query: 346 TPLAVTTSVPSTTKSLLEIQAEEALKEKRYKE 441
           + LAV  S P  +K     + EE LK ++ +E
Sbjct: 502 SILAVHVSNPFNSKRRRR-EREEQLKNRKIEE 532
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.298    0.115    0.294 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,314,193
Number of Sequences: 369166
Number of extensions: 574530
Number of successful extensions: 1233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)