Planaria EST Database


DrC_02681

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02681
         (247 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NS60|FBX41_MOUSE  F-box only protein 41                       29   3.8  
sp|P25151|SYY2_BACSU  Tyrosyl-tRNA synthetase 2 (Tyrosine--t...    28   5.0  
sp|O95180|CAC1H_HUMAN  Voltage-dependent T-type calcium chan...    28   6.6  
sp|Q92673|SORL_HUMAN  Sortilin-related receptor precursor (S...    28   6.6  
sp|O88427|CAC1H_MOUSE  Voltage-dependent T-type calcium chan...    28   6.6  
sp|Q95209|SORL_RABIT  Sortilin-related receptor precursor (S...    28   6.6  
sp|O88307|SORL_MOUSE  Sortilin-related receptor precursor (S...    28   6.6  
sp||O46240_1  [Segment 1 of 2] Hunchback protein >gi|3091611...    28   6.6  
sp|Q9UBE8|NLK_HUMAN  Serine/threonine kinase NLK (Nemo-like ...    28   8.6  
sp|Q94ID6|ERF12_ARATH  Ethylene-responsive transcription fac...    28   8.6  
>sp|Q6NS60|FBX41_MOUSE F-box only protein 41
          Length = 873

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 14  PADPSSLHNHDHRQHSNHFPVGVANRPASSP 106
           PA P  LH+H H     HFP  +   PAS P
Sbjct: 100 PAGPHLLHHHHHHAPLAHFPADLV--PASLP 128
>sp|P25151|SYY2_BACSU Tyrosyl-tRNA synthetase 2 (Tyrosine--tRNA ligase) (TyrRS 2)
          Length = 412

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 159 LHQYRPSKQNGRAASALVGEEAGRFATPTGK 67
           L++ R  ++NG     L+G+  G+   PTGK
Sbjct: 70  LNKLRQFQENGHIVQLLIGDFTGKIGDPTGK 100
>sp|O95180|CAC1H_HUMAN Voltage-dependent T-type calcium channel alpha-1H subunit
           (Voltage-gated calcium channel alpha subunit Cav3.2)
           (Low-voltage-activated calcium channel alpha1 3.2
           subunit)
          Length = 2353

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 35  HNHDHRQHSNHFPVGVANRPASSPTNAEAAL 127
           H+H H  H  HF  G   RP   P   +  L
Sbjct: 520 HHHHHHHHHYHFSHGSPRRPGPEPGACDTRL 550
>sp|Q92673|SORL_HUMAN Sortilin-related receptor precursor (Sorting protein-related receptor
            containing LDLR class A repeats) (SorLA) (SorLA-1)
            (Low-density lipoprotein receptor relative with 11
            ligand-binding repeats) (LDLR relative with 11
            ligand-binding repeats) (LR11)
          Length = 2214

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 68   NDWSVDDDRDCGGWRDLRD 12
            N W  D + DCG W D +D
Sbjct: 1384 NRWKCDRENDCGDWSDEKD 1402
>sp|O88427|CAC1H_MOUSE Voltage-dependent T-type calcium channel alpha-1H subunit
           (Voltage-gated calcium channel alpha subunit Cav3.2)
          Length = 2365

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 35  HNHDHRQHSNHFPVGVANRPASSPTNAEAAL 127
           H+H H  H  HF  G   RP+  P   +  L
Sbjct: 521 HHHHHHHHHYHFSHGGPRRPSPEPGAGDTRL 551
>sp|Q95209|SORL_RABIT Sortilin-related receptor precursor (Sorting protein-related receptor
            containing LDLR class A repeats) (SorLA) (SorLA-1)
            (Low-density lipoprotein receptor relative with 11
            ligand-binding repeats) (LDLR relative with 11
            ligand-binding repeats) (LR11)
          Length = 2213

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 68   NDWSVDDDRDCGGWRDLRD 12
            N W  D + DCG W D +D
Sbjct: 1383 NRWKCDRENDCGDWSDEKD 1401
>sp|O88307|SORL_MOUSE Sortilin-related receptor precursor (Sorting protein-related receptor
            containing LDLR class A repeats) (mSorLA) (SorLA-1)
            (Low-density lipoprotein receptor relative with 11
            ligand-binding repeats) (LDLR relative with 11
            ligand-binding repeats) (LR11) (Gp250)
          Length = 2215

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 68   NDWSVDDDRDCGGWRDLRD 12
            N W  D + DCG W D +D
Sbjct: 1384 NRWKCDRENDCGDWSDEKD 1402
>sp||O46240_1 [Segment 1 of 2] Hunchback protein
 sp||O46238_1 [Segment 1 of 2] Hunchback protein
          Length = 104

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 2   APSGPADPSSLHNHDHRQHSNHFPVGVANRPASSPTNAEAALP 130
           AP+   +P S H+H H  H +H        P  S +N+ A+ P
Sbjct: 7   APNIKQEPISHHHHHHHAHHSHH-----QHPHDSNSNSNASSP 44
>sp|Q9UBE8|NLK_HUMAN Serine/threonine kinase NLK (Nemo-like kinase) (LAK1 protein)
          Length = 515

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 23  PSSLHNHDHRQHSNHFPVGVANRPASSPTNAEAA 124
           P  LH+H H QH  H     A  P    T++ AA
Sbjct: 28  PPHLHHHHHPQHHLHPGSAAAVHPVQQHTSSAAA 61
>sp|Q94ID6|ERF12_ARATH Ethylene-responsive transcription factor 12 (Ethylene-responsive
           element-binding factor 12) (EREBP-12) (AtERF12)
          Length = 189

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 14  PADPSSLHNHDHRQHSNHFPVGVANRPASSPTNAEAALPF 133
           P  PSS H+H H  H      GV N   S  ++ EA L F
Sbjct: 106 PVPPSSDHHHQH--HRIFLRTGVLNDKTSDYSSTEAPLYF 143
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,184,150
Number of Sequences: 369166
Number of extensions: 317407
Number of successful extensions: 1003
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)