Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O12
(247 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6NS60|FBX41_MOUSE F-box only protein 41 29 3.8
sp|P25151|SYY2_BACSU Tyrosyl-tRNA synthetase 2 (Tyrosine--t... 28 5.0
sp|O95180|CAC1H_HUMAN Voltage-dependent T-type calcium chan... 28 6.6
sp|Q92673|SORL_HUMAN Sortilin-related receptor precursor (S... 28 6.6
sp|O88427|CAC1H_MOUSE Voltage-dependent T-type calcium chan... 28 6.6
sp|Q95209|SORL_RABIT Sortilin-related receptor precursor (S... 28 6.6
sp|O88307|SORL_MOUSE Sortilin-related receptor precursor (S... 28 6.6
sp||O46240_1 [Segment 1 of 2] Hunchback protein >gi|3091611... 28 6.6
sp|Q9UBE8|NLK_HUMAN Serine/threonine kinase NLK (Nemo-like ... 28 8.6
sp|Q94ID6|ERF12_ARATH Ethylene-responsive transcription fac... 28 8.6
>sp|Q6NS60|FBX41_MOUSE F-box only protein 41
Length = 873
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 14 PADPSSLHNHDHRQHSNHFPVGVANRPASSP 106
PA P LH+H H HFP + PAS P
Sbjct: 100 PAGPHLLHHHHHHAPLAHFPADLV--PASLP 128
>sp|P25151|SYY2_BACSU Tyrosyl-tRNA synthetase 2 (Tyrosine--tRNA ligase) (TyrRS 2)
Length = 412
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 159 LHQYRPSKQNGRAASALVGEEAGRFATPTGK 67
L++ R ++NG L+G+ G+ PTGK
Sbjct: 70 LNKLRQFQENGHIVQLLIGDFTGKIGDPTGK 100
>sp|O95180|CAC1H_HUMAN Voltage-dependent T-type calcium channel alpha-1H subunit
(Voltage-gated calcium channel alpha subunit Cav3.2)
(Low-voltage-activated calcium channel alpha1 3.2
subunit)
Length = 2353
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +2
Query: 35 HNHDHRQHSNHFPVGVANRPASSPTNAEAAL 127
H+H H H HF G RP P + L
Sbjct: 520 HHHHHHHHHYHFSHGSPRRPGPEPGACDTRL 550
>sp|Q92673|SORL_HUMAN Sortilin-related receptor precursor (Sorting protein-related receptor
containing LDLR class A repeats) (SorLA) (SorLA-1)
(Low-density lipoprotein receptor relative with 11
ligand-binding repeats) (LDLR relative with 11
ligand-binding repeats) (LR11)
Length = 2214
Score = 28.1 bits (61), Expect = 6.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 68 NDWSVDDDRDCGGWRDLRD 12
N W D + DCG W D +D
Sbjct: 1384 NRWKCDRENDCGDWSDEKD 1402
>sp|O88427|CAC1H_MOUSE Voltage-dependent T-type calcium channel alpha-1H subunit
(Voltage-gated calcium channel alpha subunit Cav3.2)
Length = 2365
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 35 HNHDHRQHSNHFPVGVANRPASSPTNAEAAL 127
H+H H H HF G RP+ P + L
Sbjct: 521 HHHHHHHHHYHFSHGGPRRPSPEPGAGDTRL 551
>sp|Q95209|SORL_RABIT Sortilin-related receptor precursor (Sorting protein-related receptor
containing LDLR class A repeats) (SorLA) (SorLA-1)
(Low-density lipoprotein receptor relative with 11
ligand-binding repeats) (LDLR relative with 11
ligand-binding repeats) (LR11)
Length = 2213
Score = 28.1 bits (61), Expect = 6.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 68 NDWSVDDDRDCGGWRDLRD 12
N W D + DCG W D +D
Sbjct: 1383 NRWKCDRENDCGDWSDEKD 1401
>sp|O88307|SORL_MOUSE Sortilin-related receptor precursor (Sorting protein-related receptor
containing LDLR class A repeats) (mSorLA) (SorLA-1)
(Low-density lipoprotein receptor relative with 11
ligand-binding repeats) (LDLR relative with 11
ligand-binding repeats) (LR11) (Gp250)
Length = 2215
Score = 28.1 bits (61), Expect = 6.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 68 NDWSVDDDRDCGGWRDLRD 12
N W D + DCG W D +D
Sbjct: 1384 NRWKCDRENDCGDWSDEKD 1402
>sp||O46240_1 [Segment 1 of 2] Hunchback protein
sp||O46238_1 [Segment 1 of 2] Hunchback protein
Length = 104
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 2 APSGPADPSSLHNHDHRQHSNHFPVGVANRPASSPTNAEAALP 130
AP+ +P S H+H H H +H P S +N+ A+ P
Sbjct: 7 APNIKQEPISHHHHHHHAHHSHH-----QHPHDSNSNSNASSP 44
>sp|Q9UBE8|NLK_HUMAN Serine/threonine kinase NLK (Nemo-like kinase) (LAK1 protein)
Length = 515
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 23 PSSLHNHDHRQHSNHFPVGVANRPASSPTNAEAA 124
P LH+H H QH H A P T++ AA
Sbjct: 28 PPHLHHHHHPQHHLHPGSAAAVHPVQQHTSSAAA 61
>sp|Q94ID6|ERF12_ARATH Ethylene-responsive transcription factor 12 (Ethylene-responsive
element-binding factor 12) (EREBP-12) (AtERF12)
Length = 189
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 14 PADPSSLHNHDHRQHSNHFPVGVANRPASSPTNAEAALPF 133
P PSS H+H H H GV N S ++ EA L F
Sbjct: 106 PVPPSSDHHHQH--HRIFLRTGVLNDKTSDYSSTEAPLYF 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,184,150
Number of Sequences: 369166
Number of extensions: 317407
Number of successful extensions: 1003
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)