Planaria EST Database


DrC_02676

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02676
         (230 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47670|TPIS_MYCGE  Triosephosphate isomerase (TIM) (Trios...    32   0.46 
sp|Q7VRN9|EFG_BLOFL  Elongation factor G (EF-G)                    30   1.8  
sp|P28800|A2AP_BOVIN  Alpha-2-antiplasmin precursor (Alpha-2...    28   5.1  
sp|O35412|SI1L1_RAT  Signal-induced proliferation-associated...    28   5.1  
sp|Q00423|HMGYA_SOYBN  HMG-Y-related protein A (SB16A protein)     28   5.1  
sp|Q8C0T5|SI1L1_MOUSE  Signal-induced proliferation-associat...    28   5.1  
sp|P06940|RRPP_CDVO  Phosphoprotein (P protein)                    28   6.7  
sp|O18696|PDE1_CAEEL  Probable 3',5'-cyclic phosphodiesteras...    28   6.7  
sp|P56626|RIP1_TRIAN  Type I ribosome-inactivating protein t...    28   8.7  
>sp|P47670|TPIS_MYCGE Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
          Length = 244

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 94  SERYKQYSVLPAIYNEKLFWCFKGKCATFIQIPANIDQ*ISF 219
           SER K Y+   A+ N+KLF C K      + I   + Q ISF
Sbjct: 94  SERRKYYNETSAVINQKLFACLKASMQVVLCIGEALGQEISF 135
>sp|Q7VRN9|EFG_BLOFL Elongation factor G (EF-G)
          Length = 709

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 222 PEADLLVDVSGDLDKS-CAFPFKTPEEFFVIDSRENGILFISLRGEPLFAGDLSIFPVFS 46
           P    LV V G L K  CA      EE +V DS     L   +  +P F G+L+ F V+S
Sbjct: 289 PSPTDLVSVKGILKKDGCAL-----EERYVKDSEPFSALAFKVATDP-FVGNLTFFRVYS 342

Query: 45  GVL 37
           GV+
Sbjct: 343 GVV 345
>sp|P28800|A2AP_BOVIN Alpha-2-antiplasmin precursor (Alpha-2-plasmin inhibitor)
           (Alpha-2-PI) (Alpha-2-AP)
          Length = 492

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 212 IYWSMLAGIWIKVAHFPLKHQKSFSL*IAGRTEY 111
           ++W +L    I+VAHFP K+  SF + +  R E+
Sbjct: 276 LHWFLLEQPEIQVAHFPFKNNMSFVVLMPTRFEW 309
>sp|O35412|SI1L1_RAT Signal-induced proliferation-associated 1-like protein 1 (SPA-1-like
            protein p1294)
          Length = 1822

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +2

Query: 32   KKRTPENTGNIDKSPANKGSPLRDINNIPFSRLSITKNSSGVLKGNAQLLSKSPLTSTNK 211
            K   PE   NI +S ++ G PL +    P S + +T +S  + +   +  S S L+S+++
Sbjct: 1140 KMPLPERAANIPRSISSDGRPL-ERRLSPGSDIYVTVSSMALARSQCR-NSPSNLSSSSE 1197

Query: 212  SASGAG 229
            + SG G
Sbjct: 1198 TGSGGG 1203
>sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A (SB16A protein)
          Length = 176

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 32  KKRTPENTGNIDKSPANKGSPLRDINNIPFSRLSITKNSSGVLKGNAQLLSKSPLTSTNK 211
           K +TP   G +   P  +G P +D N  P S  +     SG  +G  + + +SP  +   
Sbjct: 92  KPKTPLPPGTVVSPPRPRGRPPKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPT 151

Query: 212 SAS 220
           + S
Sbjct: 152 AVS 154
>sp|Q8C0T5|SI1L1_MOUSE Signal-induced proliferation-associated 1-like protein 1
          Length = 1782

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +2

Query: 32   KKRTPENTGNIDKSPANKGSPLRDINNIPFSRLSITKNSSGVLKGNAQLLSKSPLTSTNK 211
            K   PE   NI +S ++ G PL +    P S + +T +S  + +   +  S S L+S+++
Sbjct: 1101 KMPPPERAANIPRSISSDGRPL-ERRLSPGSDIYVTVSSMALARSQCR-NSPSNLSSSSE 1158

Query: 212  SASGAG 229
            + SG G
Sbjct: 1159 TGSGGG 1164
>sp|P06940|RRPP_CDVO Phosphoprotein (P protein)
          Length = 507

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
 Frame = +2

Query: 35  KRTPENTGNIDKSPA-------NKGSPLRDINNIPFSRLSITKNSSGVLKGNAQLLSKSP 193
           K T + T N+D +P        + G PL ++   P S     K+S   L    QLL    
Sbjct: 379 KDTGDPTANVDINPELRPIIGRDSGRPLAEVLKQPASSRGNRKDSGITLGSKGQLLRDLQ 438

Query: 194 LTSTNKSASGA 226
           L   +K +S A
Sbjct: 439 LKPIDKESSSA 449
>sp|O18696|PDE1_CAEEL Probable 3',5'-cyclic phosphodiesterase pde-1
          Length = 664

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  PENTGNIDKSPANKGSPLRDINNIPFSRLSITK 142
           P   G  DKSP+N  SPL D+ N   S  SI +
Sbjct: 569 PSVDGGDDKSPSNALSPLPDLRNSSTSPSSIRR 601
>sp|P56626|RIP1_TRIAN Type I ribosome-inactivating protein trichoanguina precursor (rRNA
           N-glycosidase) (RIP) (Trichoanguin)
          Length = 294

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 101 DINNIPFSRLSITKNSSGVLKGNAQLL 181
           ++ N   +R S+T  S+GV+KGN +LL
Sbjct: 232 ELYNPDGTRFSVTNTSAGVVKGNIKLL 258
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,396,241
Number of Sequences: 369166
Number of extensions: 460985
Number of successful extensions: 1444
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)