Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_M10
(230 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47670|TPIS_MYCGE Triosephosphate isomerase (TIM) (Trios... 32 0.46
sp|Q7VRN9|EFG_BLOFL Elongation factor G (EF-G) 30 1.8
sp|P28800|A2AP_BOVIN Alpha-2-antiplasmin precursor (Alpha-2... 28 5.1
sp|O35412|SI1L1_RAT Signal-induced proliferation-associated... 28 5.1
sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A (SB16A protein) 28 5.1
sp|Q8C0T5|SI1L1_MOUSE Signal-induced proliferation-associat... 28 5.1
sp|P06940|RRPP_CDVO Phosphoprotein (P protein) 28 6.7
sp|O18696|PDE1_CAEEL Probable 3',5'-cyclic phosphodiesteras... 28 6.7
sp|P56626|RIP1_TRIAN Type I ribosome-inactivating protein t... 28 8.7
>sp|P47670|TPIS_MYCGE Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
Length = 244
Score = 32.0 bits (71), Expect = 0.46
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 94 SERYKQYSVLPAIYNEKLFWCFKGKCATFIQIPANIDQ*ISF 219
SER K Y+ A+ N+KLF C K + I + Q ISF
Sbjct: 94 SERRKYYNETSAVINQKLFACLKASMQVVLCIGEALGQEISF 135
>sp|Q7VRN9|EFG_BLOFL Elongation factor G (EF-G)
Length = 709
Score = 30.0 bits (66), Expect = 1.8
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 222 PEADLLVDVSGDLDKS-CAFPFKTPEEFFVIDSRENGILFISLRGEPLFAGDLSIFPVFS 46
P LV V G L K CA EE +V DS L + +P F G+L+ F V+S
Sbjct: 289 PSPTDLVSVKGILKKDGCAL-----EERYVKDSEPFSALAFKVATDP-FVGNLTFFRVYS 342
Query: 45 GVL 37
GV+
Sbjct: 343 GVV 345
>sp|P28800|A2AP_BOVIN Alpha-2-antiplasmin precursor (Alpha-2-plasmin inhibitor)
(Alpha-2-PI) (Alpha-2-AP)
Length = 492
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 212 IYWSMLAGIWIKVAHFPLKHQKSFSL*IAGRTEY 111
++W +L I+VAHFP K+ SF + + R E+
Sbjct: 276 LHWFLLEQPEIQVAHFPFKNNMSFVVLMPTRFEW 309
>sp|O35412|SI1L1_RAT Signal-induced proliferation-associated 1-like protein 1 (SPA-1-like
protein p1294)
Length = 1822
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 32 KKRTPENTGNIDKSPANKGSPLRDINNIPFSRLSITKNSSGVLKGNAQLLSKSPLTSTNK 211
K PE NI +S ++ G PL + P S + +T +S + + + S S L+S+++
Sbjct: 1140 KMPLPERAANIPRSISSDGRPL-ERRLSPGSDIYVTVSSMALARSQCR-NSPSNLSSSSE 1197
Query: 212 SASGAG 229
+ SG G
Sbjct: 1198 TGSGGG 1203
>sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A (SB16A protein)
Length = 176
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 32 KKRTPENTGNIDKSPANKGSPLRDINNIPFSRLSITKNSSGVLKGNAQLLSKSPLTSTNK 211
K +TP G + P +G P +D N P S + SG +G + + +SP +
Sbjct: 92 KPKTPLPPGTVVSPPRPRGRPPKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPT 151
Query: 212 SAS 220
+ S
Sbjct: 152 AVS 154
>sp|Q8C0T5|SI1L1_MOUSE Signal-induced proliferation-associated 1-like protein 1
Length = 1782
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 32 KKRTPENTGNIDKSPANKGSPLRDINNIPFSRLSITKNSSGVLKGNAQLLSKSPLTSTNK 211
K PE NI +S ++ G PL + P S + +T +S + + + S S L+S+++
Sbjct: 1101 KMPPPERAANIPRSISSDGRPL-ERRLSPGSDIYVTVSSMALARSQCR-NSPSNLSSSSE 1158
Query: 212 SASGAG 229
+ SG G
Sbjct: 1159 TGSGGG 1164
>sp|P06940|RRPP_CDVO Phosphoprotein (P protein)
Length = 507
Score = 28.1 bits (61), Expect = 6.7
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Frame = +2
Query: 35 KRTPENTGNIDKSPA-------NKGSPLRDINNIPFSRLSITKNSSGVLKGNAQLLSKSP 193
K T + T N+D +P + G PL ++ P S K+S L QLL
Sbjct: 379 KDTGDPTANVDINPELRPIIGRDSGRPLAEVLKQPASSRGNRKDSGITLGSKGQLLRDLQ 438
Query: 194 LTSTNKSASGA 226
L +K +S A
Sbjct: 439 LKPIDKESSSA 449
>sp|O18696|PDE1_CAEEL Probable 3',5'-cyclic phosphodiesterase pde-1
Length = 664
Score = 28.1 bits (61), Expect = 6.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 44 PENTGNIDKSPANKGSPLRDINNIPFSRLSITK 142
P G DKSP+N SPL D+ N S SI +
Sbjct: 569 PSVDGGDDKSPSNALSPLPDLRNSSTSPSSIRR 601
>sp|P56626|RIP1_TRIAN Type I ribosome-inactivating protein trichoanguina precursor (rRNA
N-glycosidase) (RIP) (Trichoanguin)
Length = 294
Score = 27.7 bits (60), Expect = 8.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 101 DINNIPFSRLSITKNSSGVLKGNAQLL 181
++ N +R S+T S+GV+KGN +LL
Sbjct: 232 ELYNPDGTRFSVTNTSAGVVKGNIKLL 258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,396,241
Number of Sequences: 369166
Number of extensions: 460985
Number of successful extensions: 1444
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)