Planaria EST Database


DrC_02671

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02671
         (199 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9TSV4|TCF19_PIG  Transcription factor 19 (Transcription ...    53   2e-07
sp|Q9Y242|TCF19_HUMAN  Transcription factor 19 (Transcriptio...    53   3e-07
sp|Q7YR48|TCF19_PANTR  Transcription factor 19 (Transcriptio...    53   3e-07
sp|P29375|JAD1A_HUMAN  Jumonji/ARID domain-containing protei...    48   6e-06
sp|O74508|SPP1_SCHPO  Set1 complex component spp1 (Set1C com...    43   3e-04
sp|O81488|Y5621_ARATH  PHD finger protein At5g26210                41   0.001
sp|Q96T88|UHRF1_HUMAN  Ubiquitin-like containing PHD and RIN...    40   0.001
sp|Q9C810|Y1342_ARATH  PHD finger protein At1g33420                39   0.003
sp|Q03012|SPP1_YEAST  COMPASS component SPP1 (Complex protei...    39   0.004
sp|Q9Y7V2|YCHD_SCHPO  Protein C645.13 in chromosome III            39   0.005
>sp|Q9TSV4|TCF19_PIG Transcription factor 19 (Transcription factor SC1)
          Length = 346

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 21/51 (41%), Positives = 25/51 (49%)
 Frame = +3

Query: 39  DDCSADMCVQQSSEKVNWVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRCK 191
           + C+A  C     E V WV CD CD WFH  CV    +   E  F CP C+
Sbjct: 291 EPCAAPCCCLPQEETVAWVQCDGCDTWFHVACVGCSIQAAKEADFRCPGCR 341
>sp|Q9Y242|TCF19_HUMAN Transcription factor 19 (Transcription factor SC1)
          Length = 345

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 21/51 (41%), Positives = 25/51 (49%)
 Frame = +3

Query: 39  DDCSADMCVQQSSEKVNWVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRCK 191
           + C+A  C     E V WV CD CD WFH  CV    +   E  F CP C+
Sbjct: 290 EPCAAPCCCLPQEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCR 340
>sp|Q7YR48|TCF19_PANTR Transcription factor 19 (Transcription factor SC1)
          Length = 345

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 21/51 (41%), Positives = 25/51 (49%)
 Frame = +3

Query: 39  DDCSADMCVQQSSEKVNWVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRCK 191
           + C+A  C     E V WV CD CD WFH  CV    +   E  F CP C+
Sbjct: 290 EPCAAPCCCLPQEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCR 340
>sp|P29375|JAD1A_HUMAN Jumonji/ARID domain-containing protein 1A (Retinoblastoma-binding
            protein 2) (RBBP-2)
          Length = 1722

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +3

Query: 75   SEKVNWVACDS-CDQWFHWLCVDIKSEMEIEQKFLCPRC 188
            S+KV+WV CD  CD+WFH +CV +  EM   + ++C  C
Sbjct: 1652 SKKVDWVQCDGGCDEWFHRVCVGVSPEMAENEDYICINC 1690

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
 Frame = +3

Query: 60   CVQQSSEKVNWVACDSCDQWFHWLCVDI---------KSEMEIEQKFLCPRC 188
            C+ + +     + C+ C  WFH  CV +          S    E KFLCP C
Sbjct: 1164 CICRKTASGFMLQCELCKDWFHNSCVPLPKSSSQKKGSSWQAKEVKFLCPLC 1215
>sp|O74508|SPP1_SCHPO Set1 complex component spp1 (Set1C component spp1) (COMPASS
           component spp1) (Complex proteins associated with set1
           protein spp1)
          Length = 424

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 60  CVQQSSEKVNWV-ACDSCDQWFHWLCVDI-KSEMEIEQKFLCPRC 188
           C+ Q  +  +W+  CD C+ WFH  CV+I +S  ++  ++ CP+C
Sbjct: 121 CICQKPDDGSWMLGCDGCEDWFHGTCVNIPESYNDLTVQYFCPKC 165
>sp|O81488|Y5621_ARATH PHD finger protein At5g26210
          Length = 255

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 90  WVACDSCDQWFHWLCVDI-KSEMEIEQKFLCPRCKN 194
           W+ CD C+ WFH  CV I  +  E  +++ CP C N
Sbjct: 215 WICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 250
>sp|Q96T88|UHRF1_HUMAN Ubiquitin-like containing PHD and RING finger domains protein 1
           (Inverted CCAAT box binding protein of 90 kDa)
           (Transcription factor ICBP90) (Nuclear zinc finger
           protein Np95) (Nuclear protein 95) (HuNp95) (RING finger
           protein 106)
          Length = 793

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
 Frame = +3

Query: 6   RISGGSKRICNDD-------CSADMCV-QQSSEKVNWVACDSCDQWFHWLCVDIK-SEME 158
           R SG S + C DD       C+  +C  +Q  +K   + CD CD  FH  C+D   S + 
Sbjct: 296 RKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQ--LMCDECDMAFHIYCLDPPLSSVP 353

Query: 159 IEQKFLCPRCKN 194
            E ++ CP C+N
Sbjct: 354 SEDEWYCPECRN 365
>sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420
          Length = 697

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 42  DCSADMCVQQSSEKVNWVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRC 188
           DC    C  +  +    +ACD C  W H  C+ I +   +  KFLC RC
Sbjct: 605 DCK---CGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRC 650
>sp|Q03012|SPP1_YEAST COMPASS component SPP1 (Complex proteins associated with SET1
           protein SPP1) (Set1C component SPP1) (Suppressor of PRP
           protein 1)
          Length = 353

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 93  VACDSCDQWFHWLCVDIKSEM-EIEQKFLCPRCK 191
           V CD CD WFH+ C+ I  +  ++   F CP C+
Sbjct: 37  VGCDGCDDWFHFTCLHIPEQFKDLVFSFYCPYCQ 70
>sp|Q9Y7V2|YCHD_SCHPO Protein C645.13 in chromosome III
          Length = 721

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 60  CVQQSSEKVN--WVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRC 188
           CV +S E +   WV CD CD W H  CV + ++ +I + + C  C
Sbjct: 23  CVCKSQEDIGDTWVQCDGCDCWQHASCVGL-ADKDIPESYYCEVC 66
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,313,459
Number of Sequences: 369166
Number of extensions: 380761
Number of successful extensions: 1258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)