Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_L04
(199 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9TSV4|TCF19_PIG Transcription factor 19 (Transcription ... 53 2e-07
sp|Q9Y242|TCF19_HUMAN Transcription factor 19 (Transcriptio... 53 3e-07
sp|Q7YR48|TCF19_PANTR Transcription factor 19 (Transcriptio... 53 3e-07
sp|P29375|JAD1A_HUMAN Jumonji/ARID domain-containing protei... 48 6e-06
sp|O74508|SPP1_SCHPO Set1 complex component spp1 (Set1C com... 43 3e-04
sp|O81488|Y5621_ARATH PHD finger protein At5g26210 41 0.001
sp|Q96T88|UHRF1_HUMAN Ubiquitin-like containing PHD and RIN... 40 0.001
sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420 39 0.003
sp|Q03012|SPP1_YEAST COMPASS component SPP1 (Complex protei... 39 0.004
sp|Q9Y7V2|YCHD_SCHPO Protein C645.13 in chromosome III 39 0.005
>sp|Q9TSV4|TCF19_PIG Transcription factor 19 (Transcription factor SC1)
Length = 346
Score = 53.1 bits (126), Expect = 2e-07
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +3
Query: 39 DDCSADMCVQQSSEKVNWVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRCK 191
+ C+A C E V WV CD CD WFH CV + E F CP C+
Sbjct: 291 EPCAAPCCCLPQEETVAWVQCDGCDTWFHVACVGCSIQAAKEADFRCPGCR 341
>sp|Q9Y242|TCF19_HUMAN Transcription factor 19 (Transcription factor SC1)
Length = 345
Score = 52.8 bits (125), Expect = 3e-07
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +3
Query: 39 DDCSADMCVQQSSEKVNWVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRCK 191
+ C+A C E V WV CD CD WFH CV + E F CP C+
Sbjct: 290 EPCAAPCCCLPQEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCR 340
>sp|Q7YR48|TCF19_PANTR Transcription factor 19 (Transcription factor SC1)
Length = 345
Score = 52.8 bits (125), Expect = 3e-07
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +3
Query: 39 DDCSADMCVQQSSEKVNWVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRCK 191
+ C+A C E V WV CD CD WFH CV + E F CP C+
Sbjct: 290 EPCAAPCCCLPQEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCR 340
>sp|P29375|JAD1A_HUMAN Jumonji/ARID domain-containing protein 1A (Retinoblastoma-binding
protein 2) (RBBP-2)
Length = 1722
Score = 48.1 bits (113), Expect = 6e-06
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 75 SEKVNWVACDS-CDQWFHWLCVDIKSEMEIEQKFLCPRC 188
S+KV+WV CD CD+WFH +CV + EM + ++C C
Sbjct: 1652 SKKVDWVQCDGGCDEWFHRVCVGVSPEMAENEDYICINC 1690
Score = 32.0 bits (71), Expect = 0.46
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Frame = +3
Query: 60 CVQQSSEKVNWVACDSCDQWFHWLCVDI---------KSEMEIEQKFLCPRC 188
C+ + + + C+ C WFH CV + S E KFLCP C
Sbjct: 1164 CICRKTASGFMLQCELCKDWFHNSCVPLPKSSSQKKGSSWQAKEVKFLCPLC 1215
>sp|O74508|SPP1_SCHPO Set1 complex component spp1 (Set1C component spp1) (COMPASS
component spp1) (Complex proteins associated with set1
protein spp1)
Length = 424
Score = 42.7 bits (99), Expect = 3e-04
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +3
Query: 60 CVQQSSEKVNWV-ACDSCDQWFHWLCVDI-KSEMEIEQKFLCPRC 188
C+ Q + +W+ CD C+ WFH CV+I +S ++ ++ CP+C
Sbjct: 121 CICQKPDDGSWMLGCDGCEDWFHGTCVNIPESYNDLTVQYFCPKC 165
>sp|O81488|Y5621_ARATH PHD finger protein At5g26210
Length = 255
Score = 40.8 bits (94), Expect = 0.001
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 90 WVACDSCDQWFHWLCVDI-KSEMEIEQKFLCPRCKN 194
W+ CD C+ WFH CV I + E +++ CP C N
Sbjct: 215 WICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 250
>sp|Q96T88|UHRF1_HUMAN Ubiquitin-like containing PHD and RING finger domains protein 1
(Inverted CCAAT box binding protein of 90 kDa)
(Transcription factor ICBP90) (Nuclear zinc finger
protein Np95) (Nuclear protein 95) (HuNp95) (RING finger
protein 106)
Length = 793
Score = 40.4 bits (93), Expect = 0.001
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Frame = +3
Query: 6 RISGGSKRICNDD-------CSADMCV-QQSSEKVNWVACDSCDQWFHWLCVDIK-SEME 158
R SG S + C DD C+ +C +Q +K + CD CD FH C+D S +
Sbjct: 296 RKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQ--LMCDECDMAFHIYCLDPPLSSVP 353
Query: 159 IEQKFLCPRCKN 194
E ++ CP C+N
Sbjct: 354 SEDEWYCPECRN 365
>sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420
Length = 697
Score = 39.3 bits (90), Expect = 0.003
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 42 DCSADMCVQQSSEKVNWVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRC 188
DC C + + +ACD C W H C+ I + + KFLC RC
Sbjct: 605 DCK---CGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRC 650
>sp|Q03012|SPP1_YEAST COMPASS component SPP1 (Complex proteins associated with SET1
protein SPP1) (Set1C component SPP1) (Suppressor of PRP
protein 1)
Length = 353
Score = 38.9 bits (89), Expect = 0.004
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 93 VACDSCDQWFHWLCVDIKSEM-EIEQKFLCPRCK 191
V CD CD WFH+ C+ I + ++ F CP C+
Sbjct: 37 VGCDGCDDWFHFTCLHIPEQFKDLVFSFYCPYCQ 70
>sp|Q9Y7V2|YCHD_SCHPO Protein C645.13 in chromosome III
Length = 721
Score = 38.5 bits (88), Expect = 0.005
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 60 CVQQSSEKVN--WVACDSCDQWFHWLCVDIKSEMEIEQKFLCPRC 188
CV +S E + WV CD CD W H CV + ++ +I + + C C
Sbjct: 23 CVCKSQEDIGDTWVQCDGCDCWQHASCVGL-ADKDIPESYYCEVC 66
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,313,459
Number of Sequences: 369166
Number of extensions: 380761
Number of successful extensions: 1258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)