Planaria EST Database


DrC_02661

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02661
         (466 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70191|TRAF5_MOUSE  TNF receptor-associated factor 5            50   3e-06
sp|Q13114|TRAF3_HUMAN  TNF receptor-associated factor 3 (CD4...    49   6e-06
sp|Q60803|TRAF3_MOUSE  TNF receptor-associated factor 3 (CD4...    49   6e-06
sp|O00463|TRAF5_HUMAN  TNF receptor-associated factor 5 (RIN...    48   9e-06
sp|P39429|TRAF2_MOUSE  TNF receptor-associated factor 2            43   3e-04
sp|P28826|MEP1B_RAT  Meprin A beta-subunit precursor (Endope...    43   3e-04
sp|Q61847|MEP1B_MOUSE  Meprin A beta-subunit precursor (Endo...    43   4e-04
sp|P39428|TRAF1_MOUSE  TNF receptor-associated factor 1            42   5e-04
sp|Q16820|MEP1B_HUMAN  Meprin A beta-subunit precursor (Endo...    42   5e-04
sp|Q12933|TRAF2_HUMAN  TNF receptor-associated factor 2 (Tum...    42   7e-04
>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5
          Length = 558

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
 Frame = +1

Query: 16  LFSIPFYSHSKGYKMCLRLDRGGLCSG----FSIHFHIMKGDFDNELQWPMPYEILIGFR 183
           +FS PFY+   GY++C R    G  SG     S++F +M+G+FD+ LQWP    + +   
Sbjct: 428 VFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL 487

Query: 184 HPKTGTWRLIKKFIYKSIEEENKFKFLKPTDKMNSSCG 297
                   +++ F      + N   F +P  +MN + G
Sbjct: 488 DQSGKKNHIVETF----KADPNSSSFKRPDGEMNIASG 521
>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 (CD40 receptor associated factor
           1) (CRAF1) (CD40 binding protein) (CD40BP) (LMP1
           associated protein) (LAP1) (CAP-1)
          Length = 568

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = +1

Query: 16  LFSIPFYSHSKGYKMCLRL----DRGGLCSGFSIHFHIMKGDFDNELQWPMPYEILIGFR 183
           L+S PFY+   GYKMC R+    D  G  +  S+ F IM+G++D  L WP   ++ +   
Sbjct: 440 LYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLM 499

Query: 184 HPKTGTWRLIKKFIYKSIEEENKFKFLKPTDKMNSSCG 297
              +    L   F      + N   F KPT +MN + G
Sbjct: 500 DQGSSRRHLGDAF----KPDPNSSSFKKPTGEMNIASG 533
>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 (CD40 receptor associated factor
           1) (CRAF1) (TRAFAMN)
          Length = 567

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = +1

Query: 16  LFSIPFYSHSKGYKMCLRL----DRGGLCSGFSIHFHIMKGDFDNELQWPMPYEILIGFR 183
           L+S PFY+   GYKMC R+    D  G  +  S+ F IM+G++D  L WP   ++ +   
Sbjct: 439 LYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLM 498

Query: 184 HPKTGTWRLIKKFIYKSIEEENKFKFLKPTDKMNSSCG 297
              +    L   F      + N   F KPT +MN + G
Sbjct: 499 DQGSSRRHLGDAF----KPDPNSSSFKKPTGEMNIASG 532
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RING finger protein 84)
          Length = 557

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
 Frame = +1

Query: 16  LFSIPFYSHSKGYKMCLRL----DRGGLCSGFSIHFHIMKGDFDNELQWPMPYEILIGFR 183
           +FS  FY+   GY++C R     D  G  S  S++F +M+G+FD+ LQWP    + +   
Sbjct: 428 IFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTL-ML 486

Query: 184 HPKTGTWRLIKKFIYKSIEEENKFKFLKPTDKMNSSCG 297
             ++G   +++ F      + N   F +P  +MN + G
Sbjct: 487 LDQSGKKNIMETF----KPDPNSSSFKRPDGEMNIASG 520
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2
          Length = 501

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 16  LFSIPFYSHSKGYKMCLRL----DRGGLCSGFSIHFHIMKGDFDNELQWPMPYEILI 174
           +FS  FY+   GYKMCLR+    D  G  +  S+ F +MKG  D  LQWP   ++ +
Sbjct: 376 IFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTL 432
>sp|P28826|MEP1B_RAT Meprin A beta-subunit precursor (Endopeptidase-2)
          Length = 704

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 21/52 (40%), Positives = 33/52 (63%)
 Frame = +1

Query: 10  TRLFSIPFYSHSKGYKMCLRLDRGGLCSGFSIHFHIMKGDFDNELQWPMPYE 165
           T ++S PFYS SKGY   + LD     +   ++FH++ G  D++LQWP P++
Sbjct: 446 TTVYSPPFYS-SKGYAFQINLDLTSP-TNVGLYFHLISGANDDQLQWPCPWQ 495
>sp|Q61847|MEP1B_MOUSE Meprin A beta-subunit precursor (Endopeptidase-2)
          Length = 704

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 21/52 (40%), Positives = 33/52 (63%)
 Frame = +1

Query: 10  TRLFSIPFYSHSKGYKMCLRLDRGGLCSGFSIHFHIMKGDFDNELQWPMPYE 165
           T ++S PFYS SKGY   + +D     +   I+FH++ G  D++LQWP P++
Sbjct: 447 TSVYSPPFYS-SKGYAFQIYMDLR-YSTNVGIYFHLISGANDDQLQWPCPWQ 496
>sp|P39428|TRAF1_MOUSE TNF receptor-associated factor 1
          Length = 409

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 16  LFSIPFYSHSKGYKMCLRLDRGGLCSGFSIHFH----IMKGDFDNELQWP 153
           LFS  FY+   GYK+CLRL   G  SG   H      IM+G++D  L WP
Sbjct: 284 LFSPAFYTAKYGYKLCLRLYLNGDGSGKKTHLSLFIVIMRGEYDALLPWP 333
>sp|Q16820|MEP1B_HUMAN Meprin A beta-subunit precursor (Endopeptidase-2)
           (N-benzoyl-L-tyrosyl-P-amino-benzoic acid hydrolase beta
           subunit) (PABA peptide hydrolase) (PPH beta)
          Length = 701

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +1

Query: 16  LFSIPFYSHSKGYKMCLRLDRGGLCSGFSIHFHIMKGDFDNELQWPMPYE 165
           L+S PFYS SKGY   + L+   + +   I+FH++ G  D++LQWP P++
Sbjct: 448 LYSPPFYS-SKGYAFQIYLNLAHVTNA-GIYFHLISGANDDQLQWPCPWQ 495
>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 (Tumor necrosis factor type 2
           receptor-associated protein 3)
          Length = 501

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 16  LFSIPFYSHSKGYKMCLRL----DRGGLCSGFSIHFHIMKGDFDNELQWPMPYEILI 174
           +FS  FY+   GYKMCLR+    D  G  +  S+ F +MKG  D  L+WP   ++ +
Sbjct: 376 IFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTL 432
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,064,895
Number of Sequences: 369166
Number of extensions: 1040090
Number of successful extensions: 2045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2031
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)