Planaria EST Database


DrC_02660

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02660
         (898 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JI18|LRP1B_MOUSE  Low-density lipoprotein receptor-rela...    35   0.37 
sp|Q887Q6|ALGI_PSESM  Probable poly(beta-D-mannuronate) O-ac...    33   0.83 
sp|Q9NZR2|LRP1B_HUMAN  Low-density lipoprotein receptor-rela...    33   0.83 
sp|P59789|ALGI_PSEFL  Probable poly(beta-D-mannuronate) O-ac...    33   1.1  
sp|P35855|DLTB_LACRH  Protein dltB (Basic membrane protein) ...    33   1.4  
sp|Q88ND2|ALGI_PSEPK  Probable poly(beta-D-mannuronate) O-ac...    33   1.4  
sp|O52196|ALGI_AZOVI  Probable poly(beta-D-mannuronate) O-ac...    32   2.4  
sp|Q51392|ALGI_PSEAE  Probable poly(beta-D-mannuronate) O-ac...    32   2.4  
sp|Q9DCW2|PLS2_MOUSE  Phospholipid scramblase 2 (PL scrambla...    30   7.0  
sp|P23466|CYAA_SACKL  Adenylate cyclase (ATP pyrophosphate-l...    30   9.1  
>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B precursor
            (Low-density lipoprotein receptor-related protein-deleted
            in tumor) (LRP-DIT)
          Length = 4599

 Score = 34.7 bits (78), Expect = 0.37
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 467  PGLERGRCTRGTPPCRHTCKHIPTLTTRNTCASGTRRTLSA*NKTCRENC 318
            P + +  CT     C H C   P  T  +TCA  T   L+A N+TC  NC
Sbjct: 3270 PDVSKHLCTVNNGGCSHLCLLGPGKT--HTCACPTNFYLAADNRTCLSNC 3317
>sp|Q887Q6|ALGI_PSESM Probable poly(beta-D-mannuronate) O-acetylase (Alginate
           biosynthesis protein algI)
          Length = 518

 Score = 33.5 bits (75), Expect = 0.83
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = +2

Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTL-VTMLVSAFWHGVHPGYYL 721
           ++ +  R W++S+  WL  ++Y      R   V  +R L +TML+   WHG +  Y +
Sbjct: 273 SITEFWRRWHISLSTWLRDYLYITLGGNRGGKVATYRNLFLTMLLGGLWHGANVTYII 330
>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B precursor
            (Low-density lipoprotein receptor-related protein-deleted
            in tumor) (LRP-DIT)
          Length = 4599

 Score = 33.5 bits (75), Expect = 0.83
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 467  PGLERGRCTRGTPPCRHTCKHIPTLTTRNTCASGTRRTLSA*NKTCRENC 318
            P + +  C      C H C   P  T  +TCA  T   L+A N+TC  NC
Sbjct: 3270 PDVSKHLCMINNGGCSHLCLLAPGKT--HTCACPTNFYLAADNRTCLSNC 3317
>sp|P59789|ALGI_PSEFL Probable poly(beta-D-mannuronate) O-acetylase (Alginate
           biosynthesis protein algI)
          Length = 495

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = +2

Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTL-VTMLVSAFWHGVHPGY 715
           ++ +  R W++S+  WL  ++Y      R+  +  +R L +TML+   WHG +  Y
Sbjct: 258 SITEFWRRWHISLSTWLRDYLYITLGGNRKGTLTTYRNLFLTMLLGGLWHGANITY 313
>sp|P35855|DLTB_LACRH Protein dltB (Basic membrane protein) (BMP)
          Length = 405

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 24/182 (13%)
 Frame = +2

Query: 254 AYLITSHFYYIEYAKSDEFYDRNFLYRFCFMPIMFFVFRMRMYFAWLVS-ECVCMCAGMG 430
           A L+T   +Y+            FLY+F    I+ ++F       WL S E + M +  G
Sbjct: 184 AQLVTKAIHYLMLG---------FLYKF----ILGYIFGT----LWLPSVEHMAMASRGG 226

Query: 431 AYPACSAPVPG-----QGPTNLEAMERNKGDTRVSY----ETTRNLSISGCEWAPTVRDG 583
           A+   S PV G      G    +    +     +SY    ET  N +     W+      
Sbjct: 227 AFLGLSWPVVGVMYAYSGYLFFDFAGYSLFAVAISYLMGIETPMNFNKP---WSHITSRL 283

Query: 584 MRSWNMSVQYWLATFVYRRFP--VRAHR------------TLVTMLVSAFWHGVHPGYYL 721
           +  W +S+ +W   ++Y RF   +  H+             LV  L+   WHG    YY+
Sbjct: 284 LNRWQLSLSFWFRDYIYMRFVFFMMKHKWIKSRVWTAFVGYLVLFLIMGIWHG-ETWYYI 342

Query: 722 SF 727
            +
Sbjct: 343 VY 344
>sp|Q88ND2|ALGI_PSEPK Probable poly(beta-D-mannuronate) O-acetylase (Alginate
           biosynthesis protein algI)
          Length = 485

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = +2

Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTL-VTMLVSAFWHGVHPGYYL 721
           ++ +  R W++S+  WL  ++Y      R+     +R L +TML+   WHG +  Y +
Sbjct: 273 SITEFWRRWHISLSTWLRDYLYITLGGNRKGTFNTYRNLFLTMLLGGLWHGANFTYII 330
>sp|O52196|ALGI_AZOVI Probable poly(beta-D-mannuronate) O-acetylase (Alginate
           biosynthesis protein algI)
          Length = 499

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = +2

Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTLV-TMLVSAFWHGVH 706
           ++ +  R W++S+  WL  ++Y      R    + +R L+ TML+   WHG +
Sbjct: 273 SITEFWRRWHISLSTWLRDYLYISLGGNRGTTFQTYRNLILTMLLGGLWHGAN 325
>sp|Q51392|ALGI_PSEAE Probable poly(beta-D-mannuronate) O-acetylase (Alginate
           biosynthesis protein algI)
          Length = 520

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = +2

Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTL-VTMLVSAFWHGVHPGYYL 721
           ++ +  R W++S+  WL  ++Y      R    + +R L +TML+   WHG +  Y +
Sbjct: 273 SITEFWRRWHISLSTWLRDYLYISLGGNRGSTFQTYRNLFLTMLLGGLWHGANFTYII 330
>sp|Q9DCW2|PLS2_MOUSE Phospholipid scramblase 2 (PL scramblase 2) (Ca(2+)-dependent
           phospholipid scramblase 2)
          Length = 307

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 557 RTPKCSDCV*SHN*PACHPCCVPSLPDWLGPGLERGRCTRGTPPCRHTCKHIPTLTTRN 381
           R  +CS C        C PCC+  +     PG+  G  T+   PC      +P LT +N
Sbjct: 175 RPLRCSSC--------CFPCCLQEIEIQAPPGVPIGYVTQTWHPC------LPKLTLQN 219
>sp|P23466|CYAA_SACKL Adenylate cyclase (ATP pyrophosphate-lyase) (Adenylyl cyclase)
          Length = 1839

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 379 HAHPEHEEHYRHETKPVEKIAIIE 308
           H  P H +HY + +KP+E  A++E
Sbjct: 346 HPRPPHRKHYSNFSKPIEDKAVVE 369
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,089,484
Number of Sequences: 369166
Number of extensions: 2504486
Number of successful extensions: 6803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6777
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)