Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_I14
(898 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-rela... 35 0.37
sp|Q887Q6|ALGI_PSESM Probable poly(beta-D-mannuronate) O-ac... 33 0.83
sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-rela... 33 0.83
sp|P59789|ALGI_PSEFL Probable poly(beta-D-mannuronate) O-ac... 33 1.1
sp|P35855|DLTB_LACRH Protein dltB (Basic membrane protein) ... 33 1.4
sp|Q88ND2|ALGI_PSEPK Probable poly(beta-D-mannuronate) O-ac... 33 1.4
sp|O52196|ALGI_AZOVI Probable poly(beta-D-mannuronate) O-ac... 32 2.4
sp|Q51392|ALGI_PSEAE Probable poly(beta-D-mannuronate) O-ac... 32 2.4
sp|Q9DCW2|PLS2_MOUSE Phospholipid scramblase 2 (PL scrambla... 30 7.0
sp|P23466|CYAA_SACKL Adenylate cyclase (ATP pyrophosphate-l... 30 9.1
>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related protein-deleted
in tumor) (LRP-DIT)
Length = 4599
Score = 34.7 bits (78), Expect = 0.37
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 467 PGLERGRCTRGTPPCRHTCKHIPTLTTRNTCASGTRRTLSA*NKTCRENC 318
P + + CT C H C P T +TCA T L+A N+TC NC
Sbjct: 3270 PDVSKHLCTVNNGGCSHLCLLGPGKT--HTCACPTNFYLAADNRTCLSNC 3317
>sp|Q887Q6|ALGI_PSESM Probable poly(beta-D-mannuronate) O-acetylase (Alginate
biosynthesis protein algI)
Length = 518
Score = 33.5 bits (75), Expect = 0.83
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +2
Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTL-VTMLVSAFWHGVHPGYYL 721
++ + R W++S+ WL ++Y R V +R L +TML+ WHG + Y +
Sbjct: 273 SITEFWRRWHISLSTWLRDYLYITLGGNRGGKVATYRNLFLTMLLGGLWHGANVTYII 330
>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B precursor
(Low-density lipoprotein receptor-related protein-deleted
in tumor) (LRP-DIT)
Length = 4599
Score = 33.5 bits (75), Expect = 0.83
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 467 PGLERGRCTRGTPPCRHTCKHIPTLTTRNTCASGTRRTLSA*NKTCRENC 318
P + + C C H C P T +TCA T L+A N+TC NC
Sbjct: 3270 PDVSKHLCMINNGGCSHLCLLAPGKT--HTCACPTNFYLAADNRTCLSNC 3317
>sp|P59789|ALGI_PSEFL Probable poly(beta-D-mannuronate) O-acetylase (Alginate
biosynthesis protein algI)
Length = 495
Score = 33.1 bits (74), Expect = 1.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Frame = +2
Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTL-VTMLVSAFWHGVHPGY 715
++ + R W++S+ WL ++Y R+ + +R L +TML+ WHG + Y
Sbjct: 258 SITEFWRRWHISLSTWLRDYLYITLGGNRKGTLTTYRNLFLTMLLGGLWHGANITY 313
>sp|P35855|DLTB_LACRH Protein dltB (Basic membrane protein) (BMP)
Length = 405
Score = 32.7 bits (73), Expect = 1.4
Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 24/182 (13%)
Frame = +2
Query: 254 AYLITSHFYYIEYAKSDEFYDRNFLYRFCFMPIMFFVFRMRMYFAWLVS-ECVCMCAGMG 430
A L+T +Y+ FLY+F I+ ++F WL S E + M + G
Sbjct: 184 AQLVTKAIHYLMLG---------FLYKF----ILGYIFGT----LWLPSVEHMAMASRGG 226
Query: 431 AYPACSAPVPG-----QGPTNLEAMERNKGDTRVSY----ETTRNLSISGCEWAPTVRDG 583
A+ S PV G G + + +SY ET N + W+
Sbjct: 227 AFLGLSWPVVGVMYAYSGYLFFDFAGYSLFAVAISYLMGIETPMNFNKP---WSHITSRL 283
Query: 584 MRSWNMSVQYWLATFVYRRFP--VRAHR------------TLVTMLVSAFWHGVHPGYYL 721
+ W +S+ +W ++Y RF + H+ LV L+ WHG YY+
Sbjct: 284 LNRWQLSLSFWFRDYIYMRFVFFMMKHKWIKSRVWTAFVGYLVLFLIMGIWHG-ETWYYI 342
Query: 722 SF 727
+
Sbjct: 343 VY 344
>sp|Q88ND2|ALGI_PSEPK Probable poly(beta-D-mannuronate) O-acetylase (Alginate
biosynthesis protein algI)
Length = 485
Score = 32.7 bits (73), Expect = 1.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +2
Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTL-VTMLVSAFWHGVHPGYYL 721
++ + R W++S+ WL ++Y R+ +R L +TML+ WHG + Y +
Sbjct: 273 SITEFWRRWHISLSTWLRDYLYITLGGNRKGTFNTYRNLFLTMLLGGLWHGANFTYII 330
>sp|O52196|ALGI_AZOVI Probable poly(beta-D-mannuronate) O-acetylase (Alginate
biosynthesis protein algI)
Length = 499
Score = 32.0 bits (71), Expect = 2.4
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Frame = +2
Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTLV-TMLVSAFWHGVH 706
++ + R W++S+ WL ++Y R + +R L+ TML+ WHG +
Sbjct: 273 SITEFWRRWHISLSTWLRDYLYISLGGNRGTTFQTYRNLILTMLLGGLWHGAN 325
>sp|Q51392|ALGI_PSEAE Probable poly(beta-D-mannuronate) O-acetylase (Alginate
biosynthesis protein algI)
Length = 520
Score = 32.0 bits (71), Expect = 2.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +2
Query: 569 TVRDGMRSWNMSVQYWLATFVY------RRFPVRAHRTL-VTMLVSAFWHGVHPGYYL 721
++ + R W++S+ WL ++Y R + +R L +TML+ WHG + Y +
Sbjct: 273 SITEFWRRWHISLSTWLRDYLYISLGGNRGSTFQTYRNLFLTMLLGGLWHGANFTYII 330
>sp|Q9DCW2|PLS2_MOUSE Phospholipid scramblase 2 (PL scramblase 2) (Ca(2+)-dependent
phospholipid scramblase 2)
Length = 307
Score = 30.4 bits (67), Expect = 7.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 557 RTPKCSDCV*SHN*PACHPCCVPSLPDWLGPGLERGRCTRGTPPCRHTCKHIPTLTTRN 381
R +CS C C PCC+ + PG+ G T+ PC +P LT +N
Sbjct: 175 RPLRCSSC--------CFPCCLQEIEIQAPPGVPIGYVTQTWHPC------LPKLTLQN 219
>sp|P23466|CYAA_SACKL Adenylate cyclase (ATP pyrophosphate-lyase) (Adenylyl cyclase)
Length = 1839
Score = 30.0 bits (66), Expect = 9.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 379 HAHPEHEEHYRHETKPVEKIAIIE 308
H P H +HY + +KP+E A++E
Sbjct: 346 HPRPPHRKHYSNFSKPIEDKAVVE 369
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,089,484
Number of Sequences: 369166
Number of extensions: 2504486
Number of successful extensions: 6803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6777
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)