Planaria EST Database


DrC_02659

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02659
         (785 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34583|YN24_CAEEL  Hypothetical protein T26G10.4 in chrom...    39   0.012
sp|Q03273|PO21_POPJA  Retrovirus-related Pol polyprotein fro...    33   0.89 
sp|Q8CXM8|HIS2_OCEIH  Histidine biosynthesis bifunctional pr...    33   1.2  
sp|Q03275|PO24_POPJA  Retrovirus-related Pol polyprotein fro...    32   2.6  
sp|P03658|VG1_BPIKE  Gene I protein                                30   5.7  
sp|Q03274|PO22_POPJA  Retrovirus-related Pol polyprotein fro...    30   5.7  
sp|P18206|VINC_HUMAN  Vinculin (Metavinculin)                      30   7.5  
sp|Q04615|VINC_XENLA  Vinculin (Metavinculin)                      30   7.5  
sp|Q64727|VINC_MOUSE  Vinculin (Metavinculin)                      30   7.5  
sp|P26234|VINC_PIG  Vinculin (Metavinculin)                        30   7.5  
>sp|P34583|YN24_CAEEL Hypothetical protein T26G10.4 in chromosome III
          Length = 347

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 46/225 (20%), Positives = 100/225 (44%), Gaps = 11/225 (4%)
 Frame = +1

Query: 19  IRTSLRQILSVPI-STTTEYLYSSRKLGGIGITSCRDEYSIQSLVHAFKMLVCPDATVRD 195
           +  +++ I S+PI  +  EY+    K GG+G+   R    +  +V   K L  PD  +R+
Sbjct: 126 VMRAVKVIHSIPIRGSPLEYVQLPIKDGGLGVPCPRVTNMVTFVVSTMKKLWSPDNYIRN 185

Query: 196 VASNDLIHAATKYLKLRNLCNIDEALEWLHID--TTKKNLK-SWWSKVHIAITYLHDK-- 360
           +  +       K    +   N+++  ++L+++  T + N   + +S++  A+  L     
Sbjct: 186 LYMS-FAEEVVKMETGKKEVNLEDIAQYLNVEQRTVRSNFGYNCFSRLKDALRNLASGGD 244

Query: 361 ---LNVSIRFKRNEQGICLQIIDCLSEGNYLITYKERKSITKLLHKNISWSHTRKWNSQS 531
                + I  K  +  + +Q  +  +E   L T    K + + +++ +S +   ++++  
Sbjct: 245 SPLFKIKIVVKNKKLAVLVQATEDSNEK--LFTEDGVKKMQRAMNEQVSRALKHRFHTTK 302

Query: 532 K-SGATSTAIGASQLSTKLLF-DGSITSECWRFIHKARTSTLPVN 660
                 S  +     S K +   G+++  C RF+HKAR + L  N
Sbjct: 303 LVKSEISRVVQMHPASNKFVARGGNLSLACHRFVHKARLNLLACN 347
>sp|Q03273|PO21_POPJA Retrovirus-related Pol polyprotein from type I retrotransposable
           element R2 [Contains: Reverse transcriptase ;
           Endonuclease]
          Length = 445

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 13/38 (34%), Positives = 27/38 (71%)
 Frame = +1

Query: 10  DKRIRTSLRQILSVPISTTTEYLYSSRKLGGIGITSCR 123
           D+ IR ++R++L + + T +++LY++ + GG+GI   R
Sbjct: 54  DRLIRKAVRRVLHLSVHTGSQFLYAAIRDGGLGIPQLR 91
>sp|Q8CXM8|HIS2_OCEIH Histidine biosynthesis bifunctional protein hisIE [Includes:
           Phosphoribosyl-AMP cyclohydrolase (PRA-CH);
           Phosphoribosyl-ATP pyrophosphatase (PRA-PH)]
          Length = 215

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 388 NEQGICLQIIDCLSEGNYL-ITYKERKSITKLLHKNISWSHTRKWNSQSKSGATSTAIGA 564
           +E+G+   I+     G  L + Y    SITK +  N +W ++RK       GATS   G 
Sbjct: 13  DEKGLIPAIVQDHQSGQVLTLAYMNSDSITKTIETNETWFYSRKRQELWNKGATS---GN 69

Query: 565 SQLSTKLLFD 594
            Q   ++ FD
Sbjct: 70  KQTVKQISFD 79
>sp|Q03275|PO24_POPJA Retrovirus-related Pol polyprotein from type I retrotransposable
           element R2 [Contains: Reverse transcriptase ;
           Endonuclease]
          Length = 482

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 1   KGIDKRIRTSLRQILSVPISTTTEYLYSSRKLGGIGITSCRDEYSIQSLVHAFKMLVCPD 180
           K  D+ +R S+R++L +  S+   Y+++  + GG+GI S R           FK+    D
Sbjct: 141 KDADRLVRLSVRKVLHLNKSSPDAYIHAPIREGGLGIISLRAHIPAIMRSRLFKIATTAD 200
>sp|P03658|VG1_BPIKE Gene I protein
          Length = 365

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +1

Query: 406 LQIIDCLSEGNYLITYKERKSITKLLHKNISWSHTRKWNSQSKSGATSTAIGASQLSTKL 585
           L+ ++ +  GN  +TY E K+   +L +  +W ++R W+ +S+       + A +L   +
Sbjct: 64  LEDLESIGRGN--LTYDESKNGLLVLDECGTWFNSRNWSDKSRQPVIDWCLHARKLGWDI 121

Query: 586 LF 591
           +F
Sbjct: 122 IF 123
>sp|Q03274|PO22_POPJA Retrovirus-related Pol polyprotein from type I retrotransposable
           element R2 [Contains: Reverse transcriptase ;
           Endonuclease]
          Length = 711

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 10  DKRIRTSLRQILSVPISTTTEYLYSSRKLGGIGITSCR 123
           DK IRT++++ L + + T  +  Y+  + GG+G+T  R
Sbjct: 383 DKLIRTTVKRCLHLHLHTPNQCFYARVRDGGLGLTDLR 420
>sp|P18206|VINC_HUMAN Vinculin (Metavinculin)
          Length = 1134

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = +1

Query: 10   DKRIRTSLRQILS-VPISTTTEYLYSSRKLGGIGITSCRDEYSIQS---LVH-AFKMLVC 174
            DKRIRT+L Q+   +P  +T   + S+ K   +G T+  DE S Q+   LVH A  ++  
Sbjct: 1042 DKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQS 1101

Query: 175  PDATVRD 195
               TVR+
Sbjct: 1102 VKETVRE 1108
>sp|Q04615|VINC_XENLA Vinculin (Metavinculin)
          Length = 235

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = +1

Query: 10  DKRIRTSLRQILS-VPISTTTEYLYSSRKLGGIGITSCRDEYSIQS---LVH-AFKMLVC 174
           DKRIRT+L Q+   +P  +T   + S+ K   +G T+  DE S Q+   LVH A  ++  
Sbjct: 143 DKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQS 202

Query: 175 PDATVRD 195
              TVR+
Sbjct: 203 VKETVRE 209
>sp|Q64727|VINC_MOUSE Vinculin (Metavinculin)
          Length = 1066

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = +1

Query: 10   DKRIRTSLRQILS-VPISTTTEYLYSSRKLGGIGITSCRDEYSIQS---LVH-AFKMLVC 174
            DKRIRT+L Q+   +P  +T   + S+ K   +G T+  DE S Q+   LVH A  ++  
Sbjct: 974  DKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQS 1033

Query: 175  PDATVRD 195
               TVR+
Sbjct: 1034 VKETVRE 1040
>sp|P26234|VINC_PIG Vinculin (Metavinculin)
          Length = 1135

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = +1

Query: 10   DKRIRTSLRQILS-VPISTTTEYLYSSRKLGGIGITSCRDEYSIQS---LVH-AFKMLVC 174
            DKRIRT+L Q+   +P  +T   + S+ K   +G T+  DE S Q+   LVH A  ++  
Sbjct: 1043 DKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQS 1102

Query: 175  PDATVRD 195
               TVR+
Sbjct: 1103 VKETVRE 1109
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,275,815
Number of Sequences: 369166
Number of extensions: 1652745
Number of successful extensions: 4598
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4596
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)