Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_I12
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34583|YN24_CAEEL Hypothetical protein T26G10.4 in chrom... 39 0.012
sp|Q03273|PO21_POPJA Retrovirus-related Pol polyprotein fro... 33 0.89
sp|Q8CXM8|HIS2_OCEIH Histidine biosynthesis bifunctional pr... 33 1.2
sp|Q03275|PO24_POPJA Retrovirus-related Pol polyprotein fro... 32 2.6
sp|P03658|VG1_BPIKE Gene I protein 30 5.7
sp|Q03274|PO22_POPJA Retrovirus-related Pol polyprotein fro... 30 5.7
sp|P18206|VINC_HUMAN Vinculin (Metavinculin) 30 7.5
sp|Q04615|VINC_XENLA Vinculin (Metavinculin) 30 7.5
sp|Q64727|VINC_MOUSE Vinculin (Metavinculin) 30 7.5
sp|P26234|VINC_PIG Vinculin (Metavinculin) 30 7.5
>sp|P34583|YN24_CAEEL Hypothetical protein T26G10.4 in chromosome III
Length = 347
Score = 39.3 bits (90), Expect = 0.012
Identities = 46/225 (20%), Positives = 100/225 (44%), Gaps = 11/225 (4%)
Frame = +1
Query: 19 IRTSLRQILSVPI-STTTEYLYSSRKLGGIGITSCRDEYSIQSLVHAFKMLVCPDATVRD 195
+ +++ I S+PI + EY+ K GG+G+ R + +V K L PD +R+
Sbjct: 126 VMRAVKVIHSIPIRGSPLEYVQLPIKDGGLGVPCPRVTNMVTFVVSTMKKLWSPDNYIRN 185
Query: 196 VASNDLIHAATKYLKLRNLCNIDEALEWLHID--TTKKNLK-SWWSKVHIAITYLHDK-- 360
+ + K + N+++ ++L+++ T + N + +S++ A+ L
Sbjct: 186 LYMS-FAEEVVKMETGKKEVNLEDIAQYLNVEQRTVRSNFGYNCFSRLKDALRNLASGGD 244
Query: 361 ---LNVSIRFKRNEQGICLQIIDCLSEGNYLITYKERKSITKLLHKNISWSHTRKWNSQS 531
+ I K + + +Q + +E L T K + + +++ +S + ++++
Sbjct: 245 SPLFKIKIVVKNKKLAVLVQATEDSNEK--LFTEDGVKKMQRAMNEQVSRALKHRFHTTK 302
Query: 532 K-SGATSTAIGASQLSTKLLF-DGSITSECWRFIHKARTSTLPVN 660
S + S K + G+++ C RF+HKAR + L N
Sbjct: 303 LVKSEISRVVQMHPASNKFVARGGNLSLACHRFVHKARLNLLACN 347
>sp|Q03273|PO21_POPJA Retrovirus-related Pol polyprotein from type I retrotransposable
element R2 [Contains: Reverse transcriptase ;
Endonuclease]
Length = 445
Score = 33.1 bits (74), Expect = 0.89
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +1
Query: 10 DKRIRTSLRQILSVPISTTTEYLYSSRKLGGIGITSCR 123
D+ IR ++R++L + + T +++LY++ + GG+GI R
Sbjct: 54 DRLIRKAVRRVLHLSVHTGSQFLYAAIRDGGLGIPQLR 91
>sp|Q8CXM8|HIS2_OCEIH Histidine biosynthesis bifunctional protein hisIE [Includes:
Phosphoribosyl-AMP cyclohydrolase (PRA-CH);
Phosphoribosyl-ATP pyrophosphatase (PRA-PH)]
Length = 215
Score = 32.7 bits (73), Expect = 1.2
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 388 NEQGICLQIIDCLSEGNYL-ITYKERKSITKLLHKNISWSHTRKWNSQSKSGATSTAIGA 564
+E+G+ I+ G L + Y SITK + N +W ++RK GATS G
Sbjct: 13 DEKGLIPAIVQDHQSGQVLTLAYMNSDSITKTIETNETWFYSRKRQELWNKGATS---GN 69
Query: 565 SQLSTKLLFD 594
Q ++ FD
Sbjct: 70 KQTVKQISFD 79
>sp|Q03275|PO24_POPJA Retrovirus-related Pol polyprotein from type I retrotransposable
element R2 [Contains: Reverse transcriptase ;
Endonuclease]
Length = 482
Score = 31.6 bits (70), Expect = 2.6
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 1 KGIDKRIRTSLRQILSVPISTTTEYLYSSRKLGGIGITSCRDEYSIQSLVHAFKMLVCPD 180
K D+ +R S+R++L + S+ Y+++ + GG+GI S R FK+ D
Sbjct: 141 KDADRLVRLSVRKVLHLNKSSPDAYIHAPIREGGLGIISLRAHIPAIMRSRLFKIATTAD 200
>sp|P03658|VG1_BPIKE Gene I protein
Length = 365
Score = 30.4 bits (67), Expect = 5.7
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +1
Query: 406 LQIIDCLSEGNYLITYKERKSITKLLHKNISWSHTRKWNSQSKSGATSTAIGASQLSTKL 585
L+ ++ + GN +TY E K+ +L + +W ++R W+ +S+ + A +L +
Sbjct: 64 LEDLESIGRGN--LTYDESKNGLLVLDECGTWFNSRNWSDKSRQPVIDWCLHARKLGWDI 121
Query: 586 LF 591
+F
Sbjct: 122 IF 123
>sp|Q03274|PO22_POPJA Retrovirus-related Pol polyprotein from type I retrotransposable
element R2 [Contains: Reverse transcriptase ;
Endonuclease]
Length = 711
Score = 30.4 bits (67), Expect = 5.7
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 10 DKRIRTSLRQILSVPISTTTEYLYSSRKLGGIGITSCR 123
DK IRT++++ L + + T + Y+ + GG+G+T R
Sbjct: 383 DKLIRTTVKRCLHLHLHTPNQCFYARVRDGGLGLTDLR 420
>sp|P18206|VINC_HUMAN Vinculin (Metavinculin)
Length = 1134
Score = 30.0 bits (66), Expect = 7.5
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +1
Query: 10 DKRIRTSLRQILS-VPISTTTEYLYSSRKLGGIGITSCRDEYSIQS---LVH-AFKMLVC 174
DKRIRT+L Q+ +P +T + S+ K +G T+ DE S Q+ LVH A ++
Sbjct: 1042 DKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQS 1101
Query: 175 PDATVRD 195
TVR+
Sbjct: 1102 VKETVRE 1108
>sp|Q04615|VINC_XENLA Vinculin (Metavinculin)
Length = 235
Score = 30.0 bits (66), Expect = 7.5
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +1
Query: 10 DKRIRTSLRQILS-VPISTTTEYLYSSRKLGGIGITSCRDEYSIQS---LVH-AFKMLVC 174
DKRIRT+L Q+ +P +T + S+ K +G T+ DE S Q+ LVH A ++
Sbjct: 143 DKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQS 202
Query: 175 PDATVRD 195
TVR+
Sbjct: 203 VKETVRE 209
>sp|Q64727|VINC_MOUSE Vinculin (Metavinculin)
Length = 1066
Score = 30.0 bits (66), Expect = 7.5
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +1
Query: 10 DKRIRTSLRQILS-VPISTTTEYLYSSRKLGGIGITSCRDEYSIQS---LVH-AFKMLVC 174
DKRIRT+L Q+ +P +T + S+ K +G T+ DE S Q+ LVH A ++
Sbjct: 974 DKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQS 1033
Query: 175 PDATVRD 195
TVR+
Sbjct: 1034 VKETVRE 1040
>sp|P26234|VINC_PIG Vinculin (Metavinculin)
Length = 1135
Score = 30.0 bits (66), Expect = 7.5
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +1
Query: 10 DKRIRTSLRQILS-VPISTTTEYLYSSRKLGGIGITSCRDEYSIQS---LVH-AFKMLVC 174
DKRIRT+L Q+ +P +T + S+ K +G T+ DE S Q+ LVH A ++
Sbjct: 1043 DKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQS 1102
Query: 175 PDATVRD 195
TVR+
Sbjct: 1103 VKETVRE 1109
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,275,815
Number of Sequences: 369166
Number of extensions: 1652745
Number of successful extensions: 4598
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4596
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)