Planaria EST Database


DrC_02654

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02654
         (780 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O76031|CLPX_HUMAN  ATP-dependent Clp protease ATP-binding...   222   1e-57
sp|Q9JHS4|CLPX_MOUSE  ATP-dependent Clp protease ATP-binding...   222   1e-57
sp|Q82Y56|CLPX_NITEU  ATP-dependent Clp protease ATP-binding...   198   2e-50
sp|Q60BE7|CLPX2_METCA  ATP-dependent Clp protease ATP-bindin...   197   2e-50
sp|Q8FN57|CLPX_COREF  ATP-dependent Clp protease ATP-binding...   196   8e-50
sp|Q88VE2|CLPX_LACPL  ATP-dependent Clp protease ATP-binding...   193   5e-49
sp|Q63V40|CLPX_BURPS  ATP-dependent Clp protease ATP-binding...   192   7e-49
sp|Q7NUZ0|CLPX_CHRVO  ATP-dependent Clp protease ATP-binding...   192   7e-49
sp|Q8D347|CLPX_WIGBR  ATP-dependent Clp protease ATP-binding...   192   9e-49
sp|Q8K989|CLPX_BUCAP  ATP-dependent Clp protease ATP-binding...   191   1e-48
>sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit ClpX-like,
            mitochondrial precursor
          Length = 633

 Score =  222 bits (565), Expect = 1e-57
 Identities = 114/231 (49%), Positives = 167/231 (72%), Gaps = 1/231 (0%)
 Frame = +2

Query: 2    DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
            DEVDKI     +    RDVGGEGVQQ  LK+LEG+ VNVP+  S RK R + +QVDTTNI
Sbjct: 358  DEVDKIGSVPGIHQ-LRDVGGEGVQQGLLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNI 415

Query: 182  LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNED- 358
            LF+ASGAFNGLD+I+ +R+  ++ +GF     +            D  ++  E   ++D 
Sbjct: 416  LFVASGAFNGLDRIISRRKN-EKYLGFGTP--SNLGKGRRAAAAADLANRSGESNTHQDI 472

Query: 359  QDRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCL 538
            +++D LL+++E++DLIE G+IPEFVGR PV+V LHSL+E  L++IL EP+NA++ QY+ L
Sbjct: 473  EEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQAL 532

Query: 539  FNLDQCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIPESD 691
            F++D+C+L++TED L+AI +LA+ ++ GARGLRSI+E +L++  +E+P SD
Sbjct: 533  FSMDKCELNVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPNSD 583
>sp|Q9JHS4|CLPX_MOUSE ATP-dependent Clp protease ATP-binding subunit ClpX-like,
            mitochondrial precursor
          Length = 634

 Score =  222 bits (565), Expect = 1e-57
 Identities = 113/231 (48%), Positives = 170/231 (73%), Gaps = 1/231 (0%)
 Frame = +2

Query: 2    DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
            DEVDKI     +    RDVGGEGVQQ  LK+LEG+ VNVP+  S RK R + +QVDTTN+
Sbjct: 359  DEVDKIGSVPGIHQ-LRDVGGEGVQQGLLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNV 416

Query: 182  LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNED- 358
            LF+ASGAFNGLD+I+ +R+  ++ +GF          +++  +  D  ++  E   ++D 
Sbjct: 417  LFVASGAFNGLDRIISRRKN-EKYLGFGTPSNLGKGRRAAAAR--DLANRSGESNTHQDI 473

Query: 359  QDRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCL 538
            +++D LL+++E++DLIE G+IPEFVGR PV+V LHSL+E  L++IL EP+NA++ QY+ L
Sbjct: 474  EEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQAL 533

Query: 539  FNLDQCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIPESD 691
            F++D+C+L++TED L+AI +LA+ ++ GARGLRSI+E +L++  +E+P SD
Sbjct: 534  FSMDKCELNVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPNSD 584
>sp|Q82Y56|CLPX_NITEU ATP-dependent Clp protease ATP-binding subunit clpX
          Length = 426

 Score =  198 bits (503), Expect = 2e-50
 Identities = 108/228 (47%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
 Frame = +2

Query: 2   DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
           DE+DKIS+K    S  RDV GEGVQQA LK++EG+T  VP     +    + IQ+DTTNI
Sbjct: 186 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTTALVPPQGGRKHPNQEFIQIDTTNI 245

Query: 182 LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNEDQ 361
           LFI  GAF+G+DKI++ R +K   IGF  DV+N+ D K                      
Sbjct: 246 LFICGGAFDGIDKIIRGRSEK-SGIGFGADVINQNDRK---------------------- 282

Query: 362 DRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCLF 541
           + + +LK+IE +DLI++GLIPEFVGR PV+  L  LNE  L++ILVEPKNA++ QY  LF
Sbjct: 283 ELNKILKDIEPEDLIKYGLIPEFVGRLPVVATLSELNEAALIQILVEPKNALIKQYNKLF 342

Query: 542 NLD-QCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIP 682
           +++   +L   E  L AI + A++++ GARGLRSILE  L+DI Y++P
Sbjct: 343 SMEGGVELEFREQALVAIARKALSRKTGARGLRSILEETLLDIMYDLP 390
>sp|Q60BE7|CLPX2_METCA ATP-dependent Clp protease ATP-binding subunit clpX 2
          Length = 428

 Score =  197 bits (502), Expect = 2e-50
 Identities = 104/230 (45%), Positives = 149/230 (64%)
 Frame = +2

Query: 2   DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
           DE+DKIS+K    S  RDV GEGVQQA LK++EG+  +VP     +  + + +QV+T NI
Sbjct: 188 DEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVNTANI 247

Query: 182 LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNEDQ 361
           LFI  GAF GL+KI++ R ++   IGF+ DV +K D+++                     
Sbjct: 248 LFICGGAFAGLEKIIRSRSEQG-GIGFAADVKSKDDSRNV-------------------- 286

Query: 362 DRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCLF 541
               +L ++E++DLI +GLIPEFVGR PV+  L  L+E  L+RIL EPKNA+V QY+ LF
Sbjct: 287 --GEVLADVEAEDLIRYGLIPEFVGRLPVVATLEELDEAALVRILTEPKNALVKQYRRLF 344

Query: 542 NLDQCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIPESD 691
            ++ C+L I +D L AI + A+A++ GARGLR+ILE+ L+D  YE+P S+
Sbjct: 345 EMESCELEIRDDALGAIARKAMARKTGARGLRTILEHTLLDTMYELPSSE 394
>sp|Q8FN57|CLPX_COREF ATP-dependent Clp protease ATP-binding subunit clpX
          Length = 426

 Score =  196 bits (497), Expect = 8e-50
 Identities = 101/230 (43%), Positives = 151/230 (65%)
 Frame = +2

Query: 2   DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
           DEVDKIS+K    S  RDV GEGVQQA LK+LEG+   +P     +    D IQ+DTTNI
Sbjct: 191 DEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQLDTTNI 250

Query: 182 LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNEDQ 361
           LFI +GAF+GL+KI+ +R+ K + +GF V+V +K                       +D+
Sbjct: 251 LFIVAGAFSGLEKIIGERRGK-KGLGFGVEVASK-----------------------KDE 286

Query: 362 DRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCLF 541
           +++++ K++  +DL++ GLIPEF+GR PV+  + +L+++ L+++L EP+N++V QYK LF
Sbjct: 287 EKEDIFKDVRPEDLVKFGLIPEFIGRLPVVATVANLDQESLVKVLTEPRNSLVKQYKRLF 346

Query: 542 NLDQCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIPESD 691
            +D   L  T+D L AI  LA+ ++ GARGLR+ILE IL+ I Y+IP+ D
Sbjct: 347 EMDDTLLTFTDDALEAIADLALERKTGARGLRAILEEILVPIMYDIPDRD 396
>sp|Q88VE2|CLPX_LACPL ATP-dependent Clp protease ATP-binding subunit clpX
          Length = 421

 Score =  193 bits (490), Expect = 5e-49
 Identities = 108/230 (46%), Positives = 147/230 (63%)
 Frame = +2

Query: 2   DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
           DE+DKI+KK    S  RDV GEGVQQA LK+LEG+  NVP     +  + + IQ+DTTNI
Sbjct: 186 DEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTNI 245

Query: 182 LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNEDQ 361
           LFI  GAF+G++ IVK+R   D++IGF  D     D K++    LD              
Sbjct: 246 LFIVGGAFDGIEDIVKRRLG-DKTIGFGTDT----DGKNA---VLD-------------- 283

Query: 362 DRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCLF 541
           D  +L++ +  +DL++ GLIPEF+GR P++ AL  L ED L+RIL EPKNA+V QY+ L 
Sbjct: 284 DSKSLMQQVVPEDLLQFGLIPEFIGRLPILTALERLTEDDLVRILTEPKNALVKQYQRLI 343

Query: 542 NLDQCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIPESD 691
            LD  +L   +D LRAI + A+A+  GARGLRSI+E+ + DI Y+IP  +
Sbjct: 344 ALDGAELDFNDDALRAIAQEALARNTGARGLRSIIEDTMRDIMYDIPSRE 393
>sp|Q63V40|CLPX_BURPS ATP-dependent Clp protease ATP-binding subunit clpX
          Length = 423

 Score =  192 bits (489), Expect = 7e-49
 Identities = 103/227 (45%), Positives = 143/227 (62%)
 Frame = +2

Query: 2   DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
           DE+DKIS+K    S  RDV GEGVQQA LK++EG+  +VP     +    D IQVDTTNI
Sbjct: 186 DEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQVDTTNI 245

Query: 182 LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNEDQ 361
           LFI  GAF+GL+K++  R +K   IGF   V +K                       +++
Sbjct: 246 LFICGGAFDGLEKVITDRTEKT-GIGFGATVKSK-----------------------QER 281

Query: 362 DRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCLF 541
           D   +L+ +E +DLI+ GLIPE +GR PV+  L  L+E  LM+ILVEPKNA+V QY+ LF
Sbjct: 282 DAGEVLREVEPEDLIKFGLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLF 341

Query: 542 NLDQCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIP 682
            +++ +L I  D L+A+ + AI ++ GARGLRSI+E  L+D+ YE+P
Sbjct: 342 AMERVELEIRPDALQAVARKAIRRKTGARGLRSIIEQALLDVMYELP 388
>sp|Q7NUZ0|CLPX_CHRVO ATP-dependent Clp protease ATP-binding subunit clpX
          Length = 426

 Score =  192 bits (489), Expect = 7e-49
 Identities = 103/227 (45%), Positives = 140/227 (61%)
 Frame = +2

Query: 2   DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
           DE+DKIS+K    S  RDV GEGVQQA LK++EG+  +VP     +    + IQVDTTNI
Sbjct: 188 DEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIQVDTTNI 247

Query: 182 LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNEDQ 361
           LFI  GAF+GLDKI+++R +K   IGF  +V +K D KS                     
Sbjct: 248 LFICGGAFDGLDKIIRQRSEKG-GIGFGAEVSSKDDGKSL-------------------- 286

Query: 362 DRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCLF 541
               L + +E +D+I  GLIPE +GR PV+  L  L+E+ L+ IL +PKNA++ QY+ LF
Sbjct: 287 --TKLFQEVEPQDIIRFGLIPELIGRLPVVATLEELDEEALVSILTQPKNALIKQYQKLF 344

Query: 542 NLDQCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIP 682
           +L+  +L +    LR I K A+A++ GARGLRSILE  L+D  YE+P
Sbjct: 345 SLETVELEVRPSALRVIAKQALARKTGARGLRSILERALLDTMYELP 391
>sp|Q8D347|CLPX_WIGBR ATP-dependent Clp protease ATP-binding subunit clpX
          Length = 415

 Score =  192 bits (488), Expect = 9e-49
 Identities = 106/227 (46%), Positives = 143/227 (62%)
 Frame = +2

Query: 2   DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
           DE+DKIS+K    S  RDV GEGVQQA LK++EG+   VP     +  + +   VDTTNI
Sbjct: 185 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTISAVPKKGGRKHPQQEFFHVDTTNI 244

Query: 182 LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNEDQ 361
           LFI  GAF+GL+KI+++R     SIGF+VD+ NK          L+ N+K          
Sbjct: 245 LFICGGAFSGLNKIIEQRVLVKNSIGFNVDINNK----------LNINNKK--------- 285

Query: 362 DRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCLF 541
              N L  ++ +DLI+ GLIPEFVGR P+I  L  LN   L+ IL++PKNA+V QYK LF
Sbjct: 286 ---NFLSQVQPEDLIKFGLIPEFVGRLPIISVLKELNISELIEILIQPKNALVKQYKLLF 342

Query: 542 NLDQCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIP 682
           NL+  +L   E+ L +I K ++ K+ GARGLRSI+E+IL+D  Y +P
Sbjct: 343 NLEGVELEFNENALISIAKESLHKKTGARGLRSIIEHILLDTMYSLP 389
>sp|Q8K989|CLPX_BUCAP ATP-dependent Clp protease ATP-binding subunit clpX
          Length = 427

 Score =  191 bits (486), Expect = 1e-48
 Identities = 100/227 (44%), Positives = 144/227 (63%)
 Frame = +2

Query: 2   DEVDKISKKYILSSSCRDVGGEGVQQAFLKMLEGSTVNVPDSRSTRKARMDAIQVDTTNI 181
           DE+DKIS+K    S  RDV GEGVQQA LK++EG+  ++P     +  + + +QV+T NI
Sbjct: 186 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQVNTANI 245

Query: 182 LFIASGAFNGLDKIVKKRQQKDQSIGFSVDVLNKCDNKSSHGKYLDFNSKPDEIARNEDQ 361
           LFI +GAF+ L KI+ KR     +IGF+ ++  +   KS                     
Sbjct: 246 LFICAGAFSELSKIISKRIDTGNTIGFNCNLKKQKKKKSEQ------------------- 286

Query: 362 DRDNLLKNIESKDLIEHGLIPEFVGRFPVIVALHSLNEDMLMRILVEPKNAIVSQYKCLF 541
                L+ ++SKDLI+ GLIPEF+GR P+I  L  LNE  L++IL +PKNA++ QY+ LF
Sbjct: 287 ---YFLQQVQSKDLIKFGLIPEFIGRLPIITILKELNETALVQILCKPKNALIKQYQTLF 343

Query: 542 NLDQCDLHITEDGLRAICKLAIAKQVGARGLRSILENILMDIRYEIP 682
           NL++  L  T++ + +I K A++K+ GARGLRSI+ENIL+DI YE+P
Sbjct: 344 NLEKVKLEFTKEAVTSIAKKALSKKTGARGLRSIIENILLDIMYELP 390
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,528,012
Number of Sequences: 369166
Number of extensions: 1408476
Number of successful extensions: 4620
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4336
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)