Planaria EST Database


DrC_02650

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02650
         (577 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34220|YBF5_YEAST  Putative deoxyribonuclease YBL055c          114   2e-25
sp|P44500|Y081_HAEIN  Putative deoxyribonuclease HI0081            82   1e-15
sp|P37545|YABD_BACSU  Putative deoxyribonuclease yabD              82   1e-15
sp|P27859|TATD_ECOLI  Deoxyribonuclease tatD (DNase tatD)          79   1e-14
sp|P39408|YJJV_ECOLI  Putative deoxyribonuclease yjjV              79   1e-14
sp|P57436|Y355_BUCAI  Putative deoxyribonuclease BU355             77   3e-14
sp|Q8K9J1|Y343_BUCAP  Putative deoxyribonuclease BUsg343           71   2e-12
sp|Q9PRC8|Y017_UREPA  Putative deoxyribonuclease UU017             66   7e-11
sp|P44718|Y454_HAEIN  Putative deoxyribonuclease HI0454            65   9e-11
sp|Q93075|TATD2_HUMAN  TatD DNase domain containing deoxyrib...    64   3e-10
>sp|P34220|YBF5_YEAST Putative deoxyribonuclease YBL055c
          Length = 418

 Score =  114 bits (285), Expect = 2e-25
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 46/226 (20%)
 Frame = +2

Query: 2   RVNFCSKEIQKPHFENQVQLAVE----LQLPLYLHCRAAHEDLITILQKY---------- 139
           R ++ SKE+QK  FE Q++++         PL+LH R+A +D + IL+++          
Sbjct: 192 RFHYSSKEMQKVFFEEQLKISCLNDKLSSYPLFLHMRSACDDFVQILERFIAGFTDERDT 251

Query: 140 --------------YTYLPHDRLGVVHTFDGTIEQAEQLLEMG--FYLGINGCSLKTEEN 271
                         Y + P DR  VVH+F G+    ++LL +    ++G+NGCSL+TEEN
Sbjct: 252 FQLQKLGASSSSGFYKFHP-DRKLVVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEEN 310

Query: 272 LQVVKKLPLNKLLIETDSPWCDVRPSHAGYKYVKTFLE----------SNKKERWSENCT 421
           L VVK++P  +LL+ETD+PWC+++ +HA ++Y+  + E          S KK + ++   
Sbjct: 311 LAVVKQIPTERLLLETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLN 370

Query: 422 ------IKGRNEPGNIVQIFEILCGIRTENPDEICGILFSNSEKLF 541
                 +KGRNEP N+ Q+  ++  ++  +   +    +  + K+F
Sbjct: 371 AEELYMVKGRNEPCNMEQVAIVVSEVKDVDLATLIDTTWKTTCKIF 416
>sp|P44500|Y081_HAEIN Putative deoxyribonuclease HI0081
          Length = 262

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 2/170 (1%)
 Frame = +2

Query: 41  FENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTIEQAEQLLE 220
           FE+Q+ LA +  LP+ +H R  H+ + T L++    +P  +LGVVH F G+ +QA++ ++
Sbjct: 121 FESQLYLAKQFNLPVNIHSRKTHDQIFTFLKR----IPLSKLGVVHGFSGSYDQAKRFVD 176

Query: 221 MGFYLGINGCSL--KTEENLQVVKKLPLNKLLIETDSPWCDVRPSHAGYKYVKTFLESNK 394
           +G+ +G+ G     +  +  Q + KLPL+ L++ETDSP   V     G++          
Sbjct: 177 LGYKIGVGGTITYERANKTRQAIAKLPLDALVLETDSPDMPV----FGFQ---------- 222

Query: 395 KERWSENCTIKGRNEPGNIVQIFEILCGIRTENPDEICGILFSNSEKLFT 544
                        N P  IV+ F+ LC +R E  + I  + + N+ ++F+
Sbjct: 223 ----------GQPNRPERIVESFKALCTLRNEPAELIKKLTWENACQIFS 262
>sp|P37545|YABD_BACSU Putative deoxyribonuclease yabD
          Length = 255

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 2/176 (1%)
 Frame = +2

Query: 20  KEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTIE 199
           K+IQK  F NQ+ LA E+ LP+ +H R A ED++TIL++          G++H F G+ E
Sbjct: 104 KDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVG---GIMHCFTGSAE 160

Query: 200 QAEQLLEMGFYLGING--CSLKTEENLQVVKKLPLNKLLIETDSPWCDVRPSHAGYKYVK 373
            A + ++M FYL   G       ++  +VVK++P ++LLIETD P+    P         
Sbjct: 161 VARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRG------ 214

Query: 374 TFLESNKKERWSENCTIKGRNEPGNIVQIFEILCGIRTENPDEICGILFSNSEKLF 541
                              RNEP  +  + E +  ++    +EI  I   N+++LF
Sbjct: 215 ------------------KRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLF 252
>sp|P27859|TATD_ECOLI Deoxyribonuclease tatD (DNase tatD)
          Length = 260

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
 Frame = +2

Query: 8   NFCSKEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFD 187
           NF + E Q+  F  Q+++A +L +P+++HCR AHE  +T+L+ +   LP     V+H F 
Sbjct: 99  NFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPG---AVLHCFT 155

Query: 188 GTIEQAEQLLEMGFYLGINGCSLKTEENLQVVKKLPL---NKLLIETDSPW 331
           GT E+ +  +  G Y+GI G        L++ + LPL    KLLIETD+P+
Sbjct: 156 GTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPY 206
>sp|P39408|YJJV_ECOLI Putative deoxyribonuclease yjjV
          Length = 259

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
 Frame = +2

Query: 23  EIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTIEQ 202
           E Q+   + Q++LA    LP+ LH R  H+ L   L+++   LP  R GVVH F G+++Q
Sbjct: 110 ERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHD--LP--RTGVVHGFSGSLQQ 165

Query: 203 AEQLLEMGFYLGINGCSL--KTEENLQVVKKLPLNKLLIETDSPWCDVRPSHAGYKYVKT 376
           AE+ +++G+ +G+ G     +  +   V+ KLPL  LL+ETD+P   +     G++    
Sbjct: 166 AERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLN----GFQ---- 217

Query: 377 FLESNKKERWSENCTIKGRNEPGNIVQIFEILCGIRTENPDEICGILFSNSEKLF 541
                              N P    ++F +LC +R E  DEI   L +N+  LF
Sbjct: 218 ----------------GQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLF 256
>sp|P57436|Y355_BUCAI Putative deoxyribonuclease BU355
          Length = 264

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
 Frame = +2

Query: 17  SKEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTI 196
           +K+IQ+  F   +++A++L+ P+ +H R A ED I ILQ+          GV+H+F G  
Sbjct: 113 TKKIQQDFFREHIRVAIKLKKPIIVHSRNASEDTIKILQEENA---EKCKGVLHSFTGDY 169

Query: 197 EQAEQLLEMGFYLGINGCSL--KTEENLQVVKKLPLNKLLIETDSPWCDVRP 346
             A +LL++GFY+  +G      + E  + ++K+PLN+LLIETDSP+    P
Sbjct: 170 NTACKLLDLGFYISCSGIITFKNSLELCKTIRKIPLNRLLIETDSPYLSPAP 221
>sp|Q8K9J1|Y343_BUCAP Putative deoxyribonuclease BUsg343
          Length = 264

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = +2

Query: 8   NFCSKEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFD 187
           +F +K +Q+  F   +++A+ L  P+ +H R A +D I IL++          G++H+F 
Sbjct: 108 SFETKNLQEKFFREHIRIAITLNKPIIIHSRNAIKDTIKILKEENA---EKCGGILHSFT 164

Query: 188 GTIEQAEQLLEMGFYLGINGCSL--KTEENLQVVKKLPLNKLLIETDSPW 331
            + + A +LL+MGFY+  +G     K+ E    +KK+PL KLLIETDSP+
Sbjct: 165 ESEKSAFELLDMGFYISFSGIITFKKSIELCNTLKKIPLEKLLIETDSPY 214
>sp|Q9PRC8|Y017_UREPA Putative deoxyribonuclease UU017
          Length = 265

 Score = 65.9 bits (159), Expect = 7e-11
 Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
 Frame = +2

Query: 23  EIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTIEQ 202
           + QK  F+  ++LA +   PL LH R AH+D I IL++        +  ++H F    E 
Sbjct: 111 DFQKHWFKKHIELAKKYHKPLMLHIRNAHDDAIAILKELAV-----QDVIIHCFTDKKEY 165

Query: 203 AEQLLEMGFYLGING-CSLKTEENLQV------VKKLPLNKLLIETDSPWCDVRPSHAGY 361
           A+Q +EMG+Y+   G  + K  +N Q+      +K  PL+K+L+ETD+P+    P     
Sbjct: 166 AQQYIEMGYYISYPGVITFKPTKNNQLHELYEAIKITPLDKILVETDAPYLTPVPKRGQT 225

Query: 362 KY 367
            Y
Sbjct: 226 NY 227
>sp|P44718|Y454_HAEIN Putative deoxyribonuclease HI0454
          Length = 260

 Score = 65.5 bits (158), Expect = 9e-11
 Identities = 35/107 (32%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
 Frame = +2

Query: 17  SKEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTI 196
           +K  Q+  F +Q+ +A +L  P+ +H R+A +D I +L+++         GV+H F  T+
Sbjct: 106 NKAAQQAVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLRQHRA---EKCGGVIHCFTETM 162

Query: 197 EQAEQLLEMGFYLGING-CSLKTEENL-QVVKKLPLNKLLIETDSPW 331
           E  ++ L++GFY+  +G  + K  E + +V++ +P+ +LL+ETDSP+
Sbjct: 163 EFXKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMERLLVETDSPY 209
>sp|Q93075|TATD2_HUMAN TatD DNase domain containing deoxyribonuclease 2
          Length = 761

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
 Frame = +2

Query: 14  CSKEIQKPH--FENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFD 187
           C+  + + H  FE Q+QLAV L+ PL +HCR A EDL+ I++K   ++P D     H F 
Sbjct: 602 CTTPVPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMKK---FVPPDYKIHRHCFT 658

Query: 188 GTIEQAEQLLEMGFYLGINGCSLKTE----ENLQVVKKLPLNKLLIETDSPW 331
           G+    E LL+    + +   ++ T     E  + ++++PL ++++ETD+P+
Sbjct: 659 GSYPVIEPLLKYFPNMSVGFTAVLTYSSAWEAREALRQIPLERIIVETDAPY 710
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,568,295
Number of Sequences: 369166
Number of extensions: 1414645
Number of successful extensions: 4610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4586
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)