Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_G17
(577 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34220|YBF5_YEAST Putative deoxyribonuclease YBL055c 114 2e-25
sp|P44500|Y081_HAEIN Putative deoxyribonuclease HI0081 82 1e-15
sp|P37545|YABD_BACSU Putative deoxyribonuclease yabD 82 1e-15
sp|P27859|TATD_ECOLI Deoxyribonuclease tatD (DNase tatD) 79 1e-14
sp|P39408|YJJV_ECOLI Putative deoxyribonuclease yjjV 79 1e-14
sp|P57436|Y355_BUCAI Putative deoxyribonuclease BU355 77 3e-14
sp|Q8K9J1|Y343_BUCAP Putative deoxyribonuclease BUsg343 71 2e-12
sp|Q9PRC8|Y017_UREPA Putative deoxyribonuclease UU017 66 7e-11
sp|P44718|Y454_HAEIN Putative deoxyribonuclease HI0454 65 9e-11
sp|Q93075|TATD2_HUMAN TatD DNase domain containing deoxyrib... 64 3e-10
>sp|P34220|YBF5_YEAST Putative deoxyribonuclease YBL055c
Length = 418
Score = 114 bits (285), Expect = 2e-25
Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 46/226 (20%)
Frame = +2
Query: 2 RVNFCSKEIQKPHFENQVQLAVE----LQLPLYLHCRAAHEDLITILQKY---------- 139
R ++ SKE+QK FE Q++++ PL+LH R+A +D + IL+++
Sbjct: 192 RFHYSSKEMQKVFFEEQLKISCLNDKLSSYPLFLHMRSACDDFVQILERFIAGFTDERDT 251
Query: 140 --------------YTYLPHDRLGVVHTFDGTIEQAEQLLEMG--FYLGINGCSLKTEEN 271
Y + P DR VVH+F G+ ++LL + ++G+NGCSL+TEEN
Sbjct: 252 FQLQKLGASSSSGFYKFHP-DRKLVVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEEN 310
Query: 272 LQVVKKLPLNKLLIETDSPWCDVRPSHAGYKYVKTFLE----------SNKKERWSENCT 421
L VVK++P +LL+ETD+PWC+++ +HA ++Y+ + E S KK + ++
Sbjct: 311 LAVVKQIPTERLLLETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLN 370
Query: 422 ------IKGRNEPGNIVQIFEILCGIRTENPDEICGILFSNSEKLF 541
+KGRNEP N+ Q+ ++ ++ + + + + K+F
Sbjct: 371 AEELYMVKGRNEPCNMEQVAIVVSEVKDVDLATLIDTTWKTTCKIF 416
>sp|P44500|Y081_HAEIN Putative deoxyribonuclease HI0081
Length = 262
Score = 81.6 bits (200), Expect = 1e-15
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 2/170 (1%)
Frame = +2
Query: 41 FENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTIEQAEQLLE 220
FE+Q+ LA + LP+ +H R H+ + T L++ +P +LGVVH F G+ +QA++ ++
Sbjct: 121 FESQLYLAKQFNLPVNIHSRKTHDQIFTFLKR----IPLSKLGVVHGFSGSYDQAKRFVD 176
Query: 221 MGFYLGINGCSL--KTEENLQVVKKLPLNKLLIETDSPWCDVRPSHAGYKYVKTFLESNK 394
+G+ +G+ G + + Q + KLPL+ L++ETDSP V G++
Sbjct: 177 LGYKIGVGGTITYERANKTRQAIAKLPLDALVLETDSPDMPV----FGFQ---------- 222
Query: 395 KERWSENCTIKGRNEPGNIVQIFEILCGIRTENPDEICGILFSNSEKLFT 544
N P IV+ F+ LC +R E + I + + N+ ++F+
Sbjct: 223 ----------GQPNRPERIVESFKALCTLRNEPAELIKKLTWENACQIFS 262
>sp|P37545|YABD_BACSU Putative deoxyribonuclease yabD
Length = 255
Score = 81.6 bits (200), Expect = 1e-15
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 2/176 (1%)
Frame = +2
Query: 20 KEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTIE 199
K+IQK F NQ+ LA E+ LP+ +H R A ED++TIL++ G++H F G+ E
Sbjct: 104 KDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVG---GIMHCFTGSAE 160
Query: 200 QAEQLLEMGFYLGING--CSLKTEENLQVVKKLPLNKLLIETDSPWCDVRPSHAGYKYVK 373
A + ++M FYL G ++ +VVK++P ++LLIETD P+ P
Sbjct: 161 VARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRG------ 214
Query: 374 TFLESNKKERWSENCTIKGRNEPGNIVQIFEILCGIRTENPDEICGILFSNSEKLF 541
RNEP + + E + ++ +EI I N+++LF
Sbjct: 215 ------------------KRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLF 252
>sp|P27859|TATD_ECOLI Deoxyribonuclease tatD (DNase tatD)
Length = 260
Score = 78.6 bits (192), Expect = 1e-14
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Frame = +2
Query: 8 NFCSKEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFD 187
NF + E Q+ F Q+++A +L +P+++HCR AHE +T+L+ + LP V+H F
Sbjct: 99 NFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPG---AVLHCFT 155
Query: 188 GTIEQAEQLLEMGFYLGINGCSLKTEENLQVVKKLPL---NKLLIETDSPW 331
GT E+ + + G Y+GI G L++ + LPL KLLIETD+P+
Sbjct: 156 GTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPY 206
>sp|P39408|YJJV_ECOLI Putative deoxyribonuclease yjjV
Length = 259
Score = 78.6 bits (192), Expect = 1e-14
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Frame = +2
Query: 23 EIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTIEQ 202
E Q+ + Q++LA LP+ LH R H+ L L+++ LP R GVVH F G+++Q
Sbjct: 110 ERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHD--LP--RTGVVHGFSGSLQQ 165
Query: 203 AEQLLEMGFYLGINGCSL--KTEENLQVVKKLPLNKLLIETDSPWCDVRPSHAGYKYVKT 376
AE+ +++G+ +G+ G + + V+ KLPL LL+ETD+P + G++
Sbjct: 166 AERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLN----GFQ---- 217
Query: 377 FLESNKKERWSENCTIKGRNEPGNIVQIFEILCGIRTENPDEICGILFSNSEKLF 541
N P ++F +LC +R E DEI L +N+ LF
Sbjct: 218 ----------------GQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLF 256
>sp|P57436|Y355_BUCAI Putative deoxyribonuclease BU355
Length = 264
Score = 77.0 bits (188), Expect = 3e-14
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Frame = +2
Query: 17 SKEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTI 196
+K+IQ+ F +++A++L+ P+ +H R A ED I ILQ+ GV+H+F G
Sbjct: 113 TKKIQQDFFREHIRVAIKLKKPIIVHSRNASEDTIKILQEENA---EKCKGVLHSFTGDY 169
Query: 197 EQAEQLLEMGFYLGINGCSL--KTEENLQVVKKLPLNKLLIETDSPWCDVRP 346
A +LL++GFY+ +G + E + ++K+PLN+LLIETDSP+ P
Sbjct: 170 NTACKLLDLGFYISCSGIITFKNSLELCKTIRKIPLNRLLIETDSPYLSPAP 221
>sp|Q8K9J1|Y343_BUCAP Putative deoxyribonuclease BUsg343
Length = 264
Score = 71.2 bits (173), Expect = 2e-12
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Frame = +2
Query: 8 NFCSKEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFD 187
+F +K +Q+ F +++A+ L P+ +H R A +D I IL++ G++H+F
Sbjct: 108 SFETKNLQEKFFREHIRIAITLNKPIIIHSRNAIKDTIKILKEENA---EKCGGILHSFT 164
Query: 188 GTIEQAEQLLEMGFYLGINGCSL--KTEENLQVVKKLPLNKLLIETDSPW 331
+ + A +LL+MGFY+ +G K+ E +KK+PL KLLIETDSP+
Sbjct: 165 ESEKSAFELLDMGFYISFSGIITFKKSIELCNTLKKIPLEKLLIETDSPY 214
>sp|Q9PRC8|Y017_UREPA Putative deoxyribonuclease UU017
Length = 265
Score = 65.9 bits (159), Expect = 7e-11
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Frame = +2
Query: 23 EIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTIEQ 202
+ QK F+ ++LA + PL LH R AH+D I IL++ + ++H F E
Sbjct: 111 DFQKHWFKKHIELAKKYHKPLMLHIRNAHDDAIAILKELAV-----QDVIIHCFTDKKEY 165
Query: 203 AEQLLEMGFYLGING-CSLKTEENLQV------VKKLPLNKLLIETDSPWCDVRPSHAGY 361
A+Q +EMG+Y+ G + K +N Q+ +K PL+K+L+ETD+P+ P
Sbjct: 166 AQQYIEMGYYISYPGVITFKPTKNNQLHELYEAIKITPLDKILVETDAPYLTPVPKRGQT 225
Query: 362 KY 367
Y
Sbjct: 226 NY 227
>sp|P44718|Y454_HAEIN Putative deoxyribonuclease HI0454
Length = 260
Score = 65.5 bits (158), Expect = 9e-11
Identities = 35/107 (32%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Frame = +2
Query: 17 SKEIQKPHFENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFDGTI 196
+K Q+ F +Q+ +A +L P+ +H R+A +D I +L+++ GV+H F T+
Sbjct: 106 NKAAQQAVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLRQHRA---EKCGGVIHCFTETM 162
Query: 197 EQAEQLLEMGFYLGING-CSLKTEENL-QVVKKLPLNKLLIETDSPW 331
E ++ L++GFY+ +G + K E + +V++ +P+ +LL+ETDSP+
Sbjct: 163 EFXKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMERLLVETDSPY 209
>sp|Q93075|TATD2_HUMAN TatD DNase domain containing deoxyribonuclease 2
Length = 761
Score = 63.9 bits (154), Expect = 3e-10
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Frame = +2
Query: 14 CSKEIQKPH--FENQVQLAVELQLPLYLHCRAAHEDLITILQKYYTYLPHDRLGVVHTFD 187
C+ + + H FE Q+QLAV L+ PL +HCR A EDL+ I++K ++P D H F
Sbjct: 602 CTTPVPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMKK---FVPPDYKIHRHCFT 658
Query: 188 GTIEQAEQLLEMGFYLGINGCSLKTE----ENLQVVKKLPLNKLLIETDSPW 331
G+ E LL+ + + ++ T E + ++++PL ++++ETD+P+
Sbjct: 659 GSYPVIEPLLKYFPNMSVGFTAVLTYSSAWEAREALRQIPLERIIVETDAPY 710
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,568,295
Number of Sequences: 369166
Number of extensions: 1414645
Number of successful extensions: 4610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4586
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)