Planaria EST Database


DrC_02645

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02645
         (299 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04394|NUHM_BOVIN  NADH-ubiquinone oxidoreductase 24 kDa ...    87   1e-17
sp|P19404|NUHM_HUMAN  NADH-ubiquinone oxidoreductase 24 kDa ...    87   1e-17
sp|Q9D6J6|NUHM_MOUSE  NADH-ubiquinone oxidoreductase 24 kDa ...    87   1e-17
sp|P19234|NUHM_RAT  NADH-ubiquinone oxidoreductase 24 kDa su...    86   3e-17
sp|Q20719|NUHM_CAEEL  NADH-ubiquinone oxidoreductase 24 kDa ...    78   5e-15
sp|P40915|NUHM_NEUCR  NADH-ubiquinone oxidoreductase 24 kDa ...    64   1e-10
sp|P29914|NQO2_PARDE  NADH-quinone oxidoreductase chain 2 (N...    53   2e-07
sp|O22769|NUHM_ARATH  NADH-ubiquinone oxidoreductase 24 kDa ...    47   2e-05
sp|Q92ID9|NUOE_RICCN  NADH-quinone oxidoreductase chain E (N...    44   1e-04
sp|Q9ZDH5|NUOE_RICPR  NADH-quinone oxidoreductase chain E (N...    44   1e-04
>sp|P04394|NUHM_BOVIN NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor (Polypeptide II)
          Length = 249

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 45/84 (53%), Positives = 53/84 (63%)
 Frame = +3

Query: 9   FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
           FT  EVECLGACVNAPM+ IN              I+ E ++ + PKPGP+SG   RF+C
Sbjct: 169 FTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKIPKPGPRSG---RFSC 225

Query: 189 EPKGKLTSLAEEPKGPGFKVRPDL 260
           EP G LTSL E PKGPGF V+  L
Sbjct: 226 EPAGGLTSLTEPPKGPGFGVQAGL 249
>sp|P19404|NUHM_HUMAN NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor
          Length = 249

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 45/84 (53%), Positives = 53/84 (63%)
 Frame = +3

Query: 9   FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
           FT  EVECLGACVNAPM+ IN              I+ E ++ + PKPGP+SG   RF+C
Sbjct: 169 FTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSG---RFSC 225

Query: 189 EPKGKLTSLAEEPKGPGFKVRPDL 260
           EP G LTSL E PKGPGF V+  L
Sbjct: 226 EPAGGLTSLTEPPKGPGFGVQAGL 249
>sp|Q9D6J6|NUHM_MOUSE NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor
          Length = 248

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 45/84 (53%), Positives = 52/84 (61%)
 Frame = +3

Query: 9   FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
           FT  EVECLGACVNAPM+ IN              I+ E ++ + PKPGP+SG   RF C
Sbjct: 168 FTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKVPKPGPRSG---RFCC 224

Query: 189 EPKGKLTSLAEEPKGPGFKVRPDL 260
           EP G LTSL E PKGPGF V+  L
Sbjct: 225 EPAGGLTSLTEPPKGPGFGVQAGL 248
>sp|P19234|NUHM_RAT NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor
          Length = 241

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 44/80 (55%), Positives = 50/80 (62%)
 Frame = +3

Query: 9   FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
           FT  EVECLGACVNAPM+ IN              I+ E ++ + PKPGP+SG   RF C
Sbjct: 161 FTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGKVPKPGPRSG---RFCC 217

Query: 189 EPKGKLTSLAEEPKGPGFKV 248
           EP G LTSL E PKGPGF V
Sbjct: 218 EPAGGLTSLTEPPKGPGFGV 237
>sp|Q20719|NUHM_CAEEL NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor
          Length = 239

 Score = 78.2 bits (191), Expect = 5e-15
 Identities = 42/84 (50%), Positives = 51/84 (60%)
 Frame = +3

Query: 9   FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFAC 188
           FT +EVECLGACVNAPM+ IN              IL + ++ RKP  GP+SG   R A 
Sbjct: 158 FTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGRKPAAGPRSG---RLAA 214

Query: 189 EPKGKLTSLAEEPKGPGFKVRPDL 260
           EP G+LTSL E P GPGF ++  L
Sbjct: 215 EPFGELTSLKETPPGPGFGLQAAL 238
>sp|P40915|NUHM_NEUCR NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor
          Length = 263

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 39/81 (48%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
 Frame = +3

Query: 9   FTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRI---LKEFQSD--RKPKPGPQSGQG 173
           FTF EVECLGAC NAPM+ IN             ++   LKE  +D  + P+PGPQSG  
Sbjct: 179 FTFIEVECLGACANAPMVQINDDYFEDLTPETIKQVLSALKESVTDVSKAPQPGPQSG-- 236

Query: 174 KRFACEPKGKLTSLAEEPKGP 236
            R  CE    LTSL  EP GP
Sbjct: 237 -RQTCENAAGLTSLTSEPYGP 256
>sp|P29914|NQO2_PARDE NADH-quinone oxidoreductase chain 2 (NADH dehydrogenase I, chain 2)
           (NDH-1, chain 2)
          Length = 239

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 28/72 (38%), Positives = 38/72 (52%)
 Frame = +3

Query: 6   KFTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPKPGPQSGQGKRFA 185
           +F++ EVECLGAC NAPM  I               ++  F +   P PGPQ+G   RF+
Sbjct: 129 RFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPVPGPQNG---RFS 185

Query: 186 CEPKGKLTSLAE 221
            E  G  T+LA+
Sbjct: 186 AEALGGPTALAD 197
>sp|O22769|NUHM_ARATH NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor
          Length = 255

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
 Frame = +3

Query: 9   FTFSEVECLGACVNAPMMAI----------NXXXXXXXXXXXXIRILKEFQSDRKPKPGP 158
           F+  E+EC+G CVNAPM+ +                       + I+++ +   KP  G 
Sbjct: 164 FSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGT 223

Query: 159 QSGQGKRFACEPKGKLTSLAEEPKGPGFK 245
           Q+   KR  C P+G   +L  EPK P F+
Sbjct: 224 QN--PKRIKCGPEGGNKTLLGEPKPPQFR 250
>sp|Q92ID9|NUOE_RICCN NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E)
          Length = 167

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +3

Query: 6   KFTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSD 137
           KFT SE+ECLGACVNAP++ IN             +I+ + Q+D
Sbjct: 124 KFTLSEIECLGACVNAPVVQINDDYYEDLTQDKMGKIIDKLQND 167
>sp|Q9ZDH5|NUOE_RICPR NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E)
          Length = 177

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +3

Query: 6   KFTFSEVECLGACVNAPMMAINXXXXXXXXXXXXIRILKEFQSDRKPK 149
           KFT SE+ECLGACVNAP++ IN             ++++++ ++ K K
Sbjct: 126 KFTLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQYLNEFKSK 173
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,959,932
Number of Sequences: 369166
Number of extensions: 426416
Number of successful extensions: 1043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)